Job Description P37329 Confidence 97.31% Date Thu Jan 5 11:55:15 GMT 2012 Rank 117 Aligned Residues 197 % Identity 18% Template c3ix1B_ PDB info PDB header:biosynthetic protein Chain: B: PDB Molecule:n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding PDBTitle: periplasmic n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding2 protein from bacillus halodurans Resolution 2.40 Å

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		27	.	.	30	.	.					.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure								.	.	.	.
Query SS confidence								.	.	.	.
Query Sequence		G	K	I	T	V	F	.	.	.	.	A	A	A	S	L	T	N	A	M	Q	D	I	A	T	Q	F	K	K	E	K	G	V	D	V	V	S	S	F	A	S	S	S	T	L	A	R	Q	I	E	A	G	A	P	A	D	L	F	I	S	A	D	Q	K	W	M	D	Y	A	V	D	K	K	A	I	D	T	A	T	R	Q
Query Conservation								.	.	.	.
Alig confidence								.	.	.	.																																																			.
Template Conservation																																																														.
Template Sequence		E	T	V	E	V	M	L	D	W	Y	P	N	A	V	H	T	F	L	Y	V	A	I	E	N	G	Y	F	A	E	E	G	L	D	V	D	I	V	F	P	T	N	P	T	D	P	I	Q	L	T	A	S	G	A	I	P	L	A	L	S	Y	.	Q	P	D	V	I	L	A	R	S	K	D	L	P	V	V	S	V	A	S
Template Known Secondary structure									S	S	S	S		G	G	G									T	T					T	T									S	S	T	T								T	T	S		S						.										T	T
Template Predicted Secondary structure																																																														.
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90		.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	L	G	N	S	L	V	V	V	A	P	K	A	S	V	Q	K	D	F	T	I	D	S	K	T	N	W	T	S	L	L	N	G	G	R	L	A	V	G	D	P	E	H	V	P	A	G	I	Y	A	K	E	A	L	Q	K	L	G	A	W	D	T	L	S	P	K	L	A	P	A	E	D	V	R	G	A	L	A	L
Query Conservation
Alig confidence																		.	.	.	.	.								.	.	.	.								.	.																							.	.	.
Template Conservation																		.	.	.	.	.								.	.	.	.								.	.																							.	.	.
Template Sequence		V	V	R	S	P	L	N	H	V	M	F	L	A	E	Q	D	.	.	.	.	.	F	D	S	P	A	D	L	.	.	.	.	V	G	L	T	V	G	Y	.	.	P	G	I	P	V	N	E	P	I	L	K	T	M	V	E	A	A	G	G	D	Y	E	.	.	.	Q	V	H	L	M	D	V	G	F	E	L	G	A	S
Template Known Secondary structure					S			B						T	T	T		.	.	.	.	.		S	S	G	G	G	G	.	.	.	.	T	T	S					.	.		S		T	T												T	T			G	G	.	.	.	G							T	T
Template Predicted Secondary structure																		.	.	.	.	.								.	.	.	.								.	.																							.	.	.
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.						.	.	.	.	130	.	.					.	.	.	.	.	.	.			140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.				.	.	.	.	.	.	.	.	170	.	.	.	.	.
		183	.	.	.	.	.	.	190	.	.	.	.					.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.					.	230	.	.		.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.																																			.	.	.	.					.
Query SS confidence														.	.	.	.																																			.	.	.	.					.
Query Sequence		V	E	R	N	E	A	P	L	G	I	V	Y	.	.	.	.	G	S	D	A	V	A	S	K	G	V	K	V	V	A	T	F	P	E	D	S	H	K	K	V	E	Y	P	V	A	V	V	E	G	H	.	.	.	.	N	N	A	T	.	V	K	A	F	Y	D
Query Conservation														.	.	.	.																																			.	.	.	.					.
Alig confidence														.	.	.	.																																			.	.	.	.					.
Template Conservation
Template Sequence		I	V	S	G	R	A	D	A	V	V	G	T	Y	I	N	H	E	Y	P	V	L	K	H	E	G	H	D	I	S	Y	F	N	P	V	D	Y	G	V	P	E	Y	D	E	L	V	L	I	S	N	E	A	Y	V	E	E	S	G	E	V	L	A	A	F	W	R
Template Known Secondary structure				T	T	S		S				S		B	T	T	T								T	T								G	G	G	T	T						S
Template Predicted Secondary structure
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions