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Job DescriptionP37329
Confidence98.64%DateThu Jan 5 11:55:15 GMT 2012
Rank88Aligned Residues211
% Identity15%Templatec3ir1F_
PDB info PDB header:protein bindingChain: F: PDB Molecule:outer membrane lipoprotein gna1946; PDBTitle: crystal structure of lipoprotein gna1946 from neisseria2 meningitidis
Resolution2.15 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   27..30.... .....40.........50.........60.........70.........80.........90.........100.....
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Query Sequence  GKITVFAA. ASLTNAMQDIATQFKKEKGVDVVSSFASSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTATRQTLL
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Template Sequence  KEIVFGTTVGDFGDMVKEQIQPELEKKGYTVKLVEFTDYVRPNLALAEGELDINVFQHKPYLDDFKKEHNLDITEVFQVP
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   43......50.........60.........70.........80.........90.........100.........110.........120..
 
   106...110.........120.........130.........140.........150.........160.. .......170
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Query Sequence  GNSLVVVAPKASVQKDFTIDSKTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKLGA. . . . . . . . . . . . . . . WDTLSPKL
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Template Sequence  TAPLGLYPGKLK. . . . . . . . . . . SLEEVKDGSTVSA. . PNDPSNFARVLVMLDELGWIKLKDGINPLTASKADIAENLKN
Template Known Secondary structure  B


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   123......130.... .....140....... ..150.........160.........170.........180.........
 
   171........180.........190.........200.........210.........220.........230.. .......240.........
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Query Sequence  APAEDVRGALALVERNEAPLGIVYGSDAVASKGVKVVATFPEDSHKKVEYPVAVVEGHNNAT. VKAFYDYLKGPQAAEIF
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Template Sequence  IKIVELEAAQLPRSRADVDFAVVNGNYAISSGMKLTEALFQ. EPSFAYVNWSAVKTADKDSQWLKDVTEAYNSDAFKAYA
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   190.........200.........210.........220.........230 .........240.........250.........260........
 
   250.
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Query Sequence  KR
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Template Sequence  HK
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   269270
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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