Job Description P37329 Confidence 92.99% Date Thu Jan 5 11:55:15 GMT 2012 Rank 150 Aligned Residues 186 % Identity 11% Template c3i6vA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:periplasmic his/glu/gln/arg/opine family-binding protein; PDBTitle: crystal structure of a periplasmic his/glu/gln/arg/opine family-2 binding protein from silicibacter pomeroyi in complex with lysine Resolution 2.00 Å

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		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	L	T	N	A	M	Q	D	I	A	T	Q	F	K	K	E	K	G	V	D	V	V	S	S	F	A	S	S	S	T	L	A	R	Q	I	E	A	G	A	P	A	D	L	F	I	S	A	D	Q	K	W	M	D	Y	A	V	D	K	K	A	I	D	T	A	T	R	Q	T	L	L	G	N	S	L	V	V	V	A	P
Query Conservation
Alig confidence																																																												.	.	.	.	.	.
Template Conservation																																																												.	.	.	.	.	.
Template Sequence		G	E	V	D	G	F	E	R	E	L	G	D	E	L	C	K	R	A	G	L	T	C	E	W	V	K	N	D	W	D	S	I	I	P	N	L	V	S	G	N	Y	D	T	I	I	A	G	M	S	I	T	D	E	R	D	E	V	I	.	.	.	.	.	.	D	F	T	Q	N	Y	I	P	P	T	A	S	S	Y	V	A
Template Known Secondary structure		S				S														T										G	G	G							T	T	S		S				S	S		B							T	T	S	.	.	.	.	.	.
Template Predicted Secondary structure																																																												.	.	.	.	.	.
Template SS confidence
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.							.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	S	V	Q	K	D	F	T	I	D	S	K	T	N	W	T	S	L	L	N	G	G	R	L	A	V	G	D	P	E	H	V	P	A	G	I	Y	A	K	E	A	L	Q	K	L	G	A	W	D	T	L	S	P	K	L	A	P	A	E	D	V	R	G	A	L	A	L	V	E	R	N	E	A	P	L	G	I	V	Y
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	S	D	G	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	S	G	I	V	A	A	Q	T	A	T	I	.	.	.	.	.	.	.	.	.	.	.	.	Q	A	G	Y	I	A	E	S	G	A	T	L	V	E	F	A	T	P	E	E	T	I	A	A	V	R	N	G	E	A	D	A	V	F	A	D
Template Known Secondary structure		S	S	T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S						T	T	S		.	.	.	.	.	.	.	.	.	.	.	.								S	S	S						S	S										T	T	S	S	S
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		145	.	.	.	.	150															.	.	.	.	.	.	.	.	.	160	.	.													.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
		195	.	.	.			.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230			.	.	.	.	.	.	.	.	.	240		.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure						.	.																																	.	.											.
Query SS confidence						.	.																																	.	.											.
Query Sequence		G	S	D	A	.	.	V	A	S	K	G	V	K	V	V	A	T	F	P	E	D	S	H	K	K	V	E	Y	P	V	A	V	V	E	G	H	N	N	.	.	A	T	V	K	A	F	Y	D	Y	L	.	K	G	P	Q	A	A	E	I	F	K	R	Y
Query Conservation						.	.																																	.	.											.
Alig confidence						.	.																																	.	.											.
Template Conservation
Template Sequence		R	D	Y	L	V	P	I	V	A	E	S	G	G	E	L	M	F	V	G	D	D	V	P	L	G	G	G	V	G	M	G	L	R	E	S	D	G	E	L	R	G	K	F	D	A	A	I	T	S	M	K	E	D	G	T	L	N	T	M	I	K	K	W
Template Known Secondary structure												T	T	T	S	S										S	S								T	T																		T	S
Template Predicted Secondary structure
Template SS confidence
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions