Job Description P37329 Confidence 94.93% Date Thu Jan 5 11:55:15 GMT 2012 Rank 142 Aligned Residues 205 % Identity 11% Template c3g41A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:amino acid abc transporter, periplasmic amino acid-binding PDBTitle: the structure of cpn0482, the arginine binding protein from the2 periplasm of chlamydia pneumoniae Resolution 2.10 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.													.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	E	G	K	I	T	V	F	A	A	A	S	L	.	.	.	.	.	.	.	.	.	.	.	.	T	N	A	M	Q	D	I	A	T	Q	F	K	K	E	K	G	V	D	V	V	S	S	F	A	S	S	S	T	L	A	R	Q	I	E	A	G	A	P	A	D	L	F	I	S	A	D	Q	K	W	M	D	Y	A	V	D
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	N	R	I	W	I	V	G	T	N	A	T	Y	P	P	F	E	Y	V	D	A	Q	G	E	V	V	G	F	D	I	D	L	A	K	A	I	S	E	K	L	G	K	Q	L	E	V	R	E	F	A	F	D	A	L	I	L	N	L	K	K	H	R	I	D	A	I	L	A	G	M	S	I	T	P	S	R	Q	K	E	I
Template Known Secondary structure												S		B	T	T	T	B				T	T	S				S														T										G	G	G							T	T	S	S	S				S			B							T	T	S
Template Predicted Secondary structure
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	K	A	I	D	T	A	T	R	Q	T	L	L	G	N	S	L	V	V	V	A	P	K	A	S	V	Q	K	D	F	T	I	D	S	K	T	N	W	T	S	L	L	N	G	G	R	L	A	V	G	D	P	E	H	V	P	A	G	I	Y	A	K	E	A	L	Q	K	L	G	A	W	D	T	L	S	P	K	L	A	P
Query Conservation
Alig confidence		.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	A	L	L	P	Y	Y	G	D	E	V	Q	E	L	M	V	V	S	K	R	S	L	E	T	P	V	L	P	L	T	Q	Y	S	S	V	A	V	Q	T	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	Y	Q	E	H	Y	L	L	S	Q	P	G	I	C	V	R	S
Template Known Secondary structure		.	.	.	.	.	.										B									T	T			S		S			G	G	G	S	S						T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S								T	S	T	T
Template Predicted Secondary structure		.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
								88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.																			.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.			.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.		.	.	.	.	.	.	.	240					.	.	.	.	.
Predicted Secondary structure																												.	.																																			.									.	.	.	.
Query SS confidence																												.	.																																			.									.	.	.	.
Query Sequence		A	E	D	V	R	G	A	L	A	L	V	E	R	N	E	A	P	L	G	I	V	Y	G	S	D	A	.	.	V	A	S	K	G	V	K	V	V	A	T	F	P	E	D	S	H	K	K	V	E	Y	P	V	A	V	V	E	G	H	N	N	A	T	.	V	K	A	F	Y	D	Y	L	.	.	.	.	K	G	P	Q	A
Query Conservation																												.	.																																			.									.	.	.	.
Alig confidence																												.	.																																			.									.	.	.	.
Template Conservation
Template Sequence		F	D	S	T	L	E	V	I	M	E	V	R	Y	G	K	S	P	V	A	V	L	E	P	S	V	G	R	V	V	L	K	D	F	P	N	L	V	A	T	R	L	E	L	P	P	E	C	W	V	L	G	C	G	L	G	V	A	K	D	R	P	E	E	I	Q	T	I	Q	Q	A	I	T	D	L	K	S	E	G	V	I
Template Known Secondary structure			S											T	T	S	S	S													G	G	G		T	T										G	G	G		B									T	T																		T	T
Template Predicted Secondary structure
Template SS confidence
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		246	.	.	.	250	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	I	F	K	R	Y	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	S	L	T	K	K	W	Q
Template Known Secondary structure								T	T
Template Predicted Secondary structure
Template SS confidence
		224	.	.	.	.	.	230	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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