Job Description P37329 Confidence 99.59% Date Thu Jan 5 11:55:15 GMT 2012 Rank 60 Aligned Residues 229 % Identity 14% Template c2zykA_ PDB info PDB header:sugar binding protein Chain: A: PDB Molecule:solute-binding protein; PDBTitle: crystal structure of cyclo/maltodextrin-binding protein2 complexed with gamma-cyclodextrin Resolution 2.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		25	.	.	.	.	30	.	.	.	.				.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.					.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.																																.	.	.	.
Query SS confidence												.	.	.																																.	.	.	.
Query Sequence		D	E	G	K	I	T	V	F	A	A	.	.	.	A	S	L	T	N	A	M	Q	D	I	A	T	Q	F	K	K	E	K	G	V	D	V	V	S	S	F	A	S	S	S	T	.	.	.	.	L	A	R	Q	I	E	A	G	A	P	A	D	L	F	I	S	A	D	Q	K	W	M	D	Y	A	V	D	K	K	A	I	D
Query Conservation												.	.	.																																.	.	.	.
Alig confidence												.	.	.																																.	.	.	.																	.
Template Conservation																																																																		.
Template Sequence		K	P	D	K	L	V	V	W	E	N	A	D	D	G	V	Q	L	N	N	T	K	K	W	A	G	E	F	T	K	K	T	G	I	Q	V	E	V	V	P	V	A	L	L	K	Q	Q	E	K	L	T	L	D	G	P	A	G	K	G	A	D	L	V	T	W	.	P	H	D	R	L	G	E	A	V	T	K	G	L	L	Q
Template Known Secondary structure														S	S																												T	T	T									G	G	G	T		S		S					.		G	G	G	T	T					T	T
Template Predicted Secondary structure																																																																		.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80		.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		98	.	100	.																									.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.							.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.
Query Sequence		T	A	T	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	T	L	L	G	N	S	L	V	V	V	A	P	K	A	S	V	Q	K	D	F	T	I	D	S	K	T	N	W	T	.	.	.	.	.	.	S	L	L	N	G	G	R	L	A	V	G	D	P	E	H	V
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.										.	.	.	.	.	.
Template Conservation																																																	.	.
Template Sequence		P	I	Q	V	D	N	S	V	K	N	Q	F	D	D	V	A	M	K	A	L	T	Y	G	G	K	L	Y	G	L	P	K	A	I	E	S	V	A	L	I	Y	N	K	K	L	M	G	Q	.	.	V	P	A	T	Y	D	E	L	F	Q	Y	A	K	A	N	N	K	P	D	E	Q	K	Y	G	V	L	F	E	A	N	N
Template Known Secondary structure												T	B								T			T	T																		T	T	T		S	S	.	.			S	B													B	T	T	T	T	B							T	T
Template Predicted Secondary structure																																																	.	.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.			.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		148	.	150	.	.	.	.	.																											.	.	.	.	160	.	.	.	.	.	.			.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Query Sequence		P	A	G	I	Y	A	K	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	Q	K	L	G	A	W	D	T	L	.	.	S	P	K	L	A	P	A	E	D	V	R	G	A	L	A	L	V	E	R	N	E	A	P	L	G	I	V	Y	G	S	D	A	V
Query Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Template Conservation
Template Sequence		F	Y	Y	T	Y	F	L	F	A	A	K	G	A	A	V	F	K	E	Q	D	G	T	L	D	P	N	E	I	G	L	N	S	P	E	A	V	Q	G	M	N	E	V	Q	K	W	F	T	E	A	R	L	P	Q	S	L	K	A	D	T	V	N	G	L	F	K	S	G	K	V	A	A	V	I	N	G	P	W	A	I	K
Template Known Secondary structure										T	T	T	T			S				S	S	S	S								T	T	S																T	S				T	T												T	T									G	G	G
Template Predicted Secondary structure
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		200	.	.	.	.	.	.	.	.	.	210									.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.		.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.																							.
Query SS confidence													.	.	.	.	.	.	.	.																							.
Query Sequence		A	S	K	G	V	K	V	V	A	T	F	.	.	.	.	.	.	.	.	P	E	D	S	H	K	K	V	E	Y	P	V	A	V	V	E	G	H	N	N	A	T	.	V	K	A	F	Y	D	Y	L	K	G	P	Q	A	A	E	I	F	K	R	Y	G	F	T	I
Query Conservation													.	.	.	.	.	.	.	.																							.
Alig confidence													.	.	.	.	.	.	.	.																							.
Template Conservation
Template Sequence		D	Y	Q	A	A	G	I	N	V	G	V	A	P	L	P	K	I	D	G	K	D	A	Q	T	F	I	G	V	K	G	W	Y	L	S	A	Y	S	K	Y	P	K	Y	A	T	E	L	M	Q	F	L	T	S	K	E	A	L	A	S	R	F	K	E	T	G	E	I
Template Known Secondary structure						T	T										B	S	S	S	S															T	T		S														S
Template Predicted Secondary structure
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions