Job Description P37329 Confidence 95.97% Date Thu Jan 5 11:55:15 GMT 2012 Rank 136 Aligned Residues 214 % Identity 15% Template c2ylnA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:putative abc transporter, periplasmic binding protein, PDBTitle: crystal structure of the l-cystine solute receptor of2 neisseria gonorrhoeae in the closed conformation Resolution 1.12 Å

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		17	.	.	20	.	.	.	.	.				.	.	.	.	30	.	.	.	.	.	.	.													.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure											.	.	.													.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.													.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	V	A	G	N	A	L	A	D	.	.	.	E	G	K	I	T	V	F	A	A	A	S	L	.	.	.	.	.	.	.	.	.	.	.	.	T	N	A	M	Q	D	I	A	T	Q	F	K	K	E	K	G	V	D	V	V	S	S	F	A	S	S	S	T	L	A	R	Q	I	E	A	G	A	P	A	D	L	F	I	S
Query Conservation											.	.	.													.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.													.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	I	S	G	S	L	I	E	R	I	N	N	K	G	T	V	T	V	G	T	E	G	T	Y	A	P	F	T	Y	H	D	K	D	G	K	L	T	G	Y	D	V	E	V	T	R	A	V	A	E	K	L	G	V	K	V	E	F	K	E	T	Q	W	D	S	M	M	A	G	L	K	A	G	R	F	D	V	V	A	N	Q
Template Known Secondary structure			T	T										T									S			T	T	T					T	T	S				S														T										G	G	G								T	S		S				S	S
Template Predicted Secondary structure
Template SS confidence
		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	Q	K	W	M	D	Y	A	V	D	K	K	A	I	D	T	A	T	R	Q	T	L	L	G	N	S	L	V	V	V	A	P	K	A	S	V	Q	K	D	F	T	I	D	S	K	T	N	W	T	S	L	L	N	G	G	R	L	A	V	G	D	P	E	H	V	P	A	G	I	Y	A	K	E	A	L	Q	K	L	G
Query Conservation
Alig confidence													.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	G	L	T	S	P	E	R	Q	A	T	.	.	.	.	.	.	F	D	K	S	E	P	Y	S	W	S	G	A	V	L	V	A	H	N	D	S	N	I	K	S	I	A	D	.	.	.	.	.	.	.	.	.	I	K	G	V	K	T	A	Q	S	L	T	S	.	.	.	.	.	.	.	.	.	.	.	N	Y	G	E
Template Known Secondary structure						S							.	.	.	.	.	.					S		S											T	T		S			S	G	G	G	.	.	.	.	.	.	.	.	.		T	T	S						T	T	S	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure													.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.							.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.										.	.	.	.	.	.	160	.	.	.	.	.												.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.					.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230			.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.																																	.	.
Query SS confidence																																							.	.	.	.																																	.	.
Query Sequence		A	W	D	T	L	S	P	K	L	A	P	A	E	D	V	R	G	A	L	A	L	V	E	R	N	E	A	P	L	G	I	V	Y	G	S	D	A	.	.	.	.	V	A	S	K	G	V	K	V	V	A	T	F	P	E	D	S	H	K	K	V	E	Y	P	V	A	V	V	E	G	H	N	N	.	.	A	T	V	K	A
Query Conservation																																							.	.	.	.																																	.	.
Alig confidence																																							.	.	.	.																																	.	.
Template Conservation
Template Sequence		K	A	K	A	A	G	A	Q	L	V	P	V	D	G	L	A	Q	S	L	T	L	I	E	Q	K	R	A	D	A	T	L	N	D	E	L	A	V	L	D	Y	L	K	K	N	P	N	A	G	V	K	I	V	W	S	A	P	A	D	E	K	V	G	S	G	L	I	V	N	K	G	N	D	E	A	V	A	K	F	S	T
Template Known Secondary structure						T	T							S	S										T	T	S																		S	T	T	S	S									G	G	G										S	S
Template Predicted Secondary structure
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		236	.	.	.	240	.	.	.		.	.	.	.	.	.	250	.	.		.	.	.	.
Predicted Secondary structure										.										.
Query SS confidence										.										.
Query Sequence		F	Y	D	Y	L	K	G	P	.	Q	A	A	E	I	F	K	R	Y	.	G	F	T	I
Query Conservation										.										.
Alig confidence										.										.
Template Conservation
Template Sequence		A	I	N	E	L	K	A	D	G	T	L	K	K	L	G	E	Q	F	F	G	K	D	I
Template Known Secondary structure									T	T											S	S
Template Predicted Secondary structure
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions