Job Description P37329 Confidence 98.13% Date Thu Jan 5 11:55:15 GMT 2012 Rank 100 Aligned Residues 215 % Identity 8% Template c2x26A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:periplasmic aliphatic sulphonates-binding protein; PDBTitle: crystal structure of the periplasmic aliphatic sulphonate2 binding protein ssua from escherichia coli Resolution 1.75 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.			.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure																														.	.
Query SS confidence																														.	.
Query Sequence		D	E	G	K	I	T	V	F	A	A	A	S	L	T	N	A	M	Q	D	I	A	T	Q	F	K	K	E	K	.	.	G	V	D	V	V	S	S	F	A	S	S	S	T	L	A	R	Q	I	E	A	G	A	P	A	D	L	F	I	S	A	D	Q	K	W	M	D	Y	A	V	D	K	K	A	I	D	T	A	T	R	Q
Query Conservation																														.	.
Alig confidence																														.	.
Template Conservation
Template Sequence		S	P	E	A	L	R	I	G	Y	Q	K	G	S	I	G	M	V	L	A	K	S	H	Q	L	L	E	K	R	Y	P	E	S	K	I	S	W	V	E	F	P	A	G	P	Q	M	L	E	A	L	N	V	G	S	I	D	L	G	S	T	G	D	I	P	P	I	F	A	Q	A	A	G	A	D	L	V	Y	V	G	V	E
Template Known Secondary structure				S								T	T										T	T							T	T	S								S	S											T	S		S						S									T	T
Template Predicted Secondary structure
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	L	G	N	S	L	V	V	V	A	P	K	A	S	V	Q	K	D	F	T	I	D	S	K	T	N	W	T	S	L	L	N	G	G	R	L	A	V	G	D	P	E	H	V	P	A	G	I	Y	A	K	E	A	L	Q	K	L	G	A	W	D	T	L	S	P	K	L	A	P	A	E	D	V	R	G	A	L	A	L
Query Conservation
Alig confidence																		.	.	.	.	.								.	.	.	.	.																														.	.	.
Template Conservation																		.	.	.	.	.								.	.	.	.	.																														.	.	.
Template Sequence		P	P	K	P	K	A	E	V	I	L	V	A	E	N	S	P	.	.	.	.	.	I	K	T	V	A	D	L	.	.	.	.	.	K	G	H	K	V	A	F	Q	K	G	S	S	S	H	N	L	L	L	R	A	L	R	Q	A	G	L	K	F	T	.	.	.	D	I	Q	P	T	Y	L	T	P	A	D	A	R	A	A
Template Known Secondary structure					G	G	G							T	T		S	.	.	.	.	.			S	G	G	G	G	.	.	.	.	.	T	T	S						T	T	S													T	T			G	G	.	.	.	G	S
Template Predicted Secondary structure																		.	.	.	.	.								.	.	.	.	.																														.	.	.
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120						.	.	.	.	.	.	.						.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.				.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.				.	230	.	.		.	.	.	.	.	.	.	240	.	.										.	.	.	.	.	.	.
Predicted Secondary structure																																																.	.	.					.											.	.	.	.	.	.	.	.	.
Query SS confidence																																																.	.	.					.											.	.	.	.	.	.	.	.	.
Query Sequence		V	E	R	N	E	A	P	L	G	I	V	Y	G	S	D	A	V	A	S	K	G	V	K	V	V	A	T	F	P	E	D	S	H	K	K	V	E	Y	P	V	A	V	V	E	G	H	.	.	.	N	N	A	T	.	V	K	A	F	Y	D	Y	L	K	G	.	.	.	.	.	.	.	.	.	P	Q	A	A	E	I	F
Query Conservation																																																.	.	.					.											.	.	.	.	.	.	.	.	.
Alig confidence																																																.	.	.					.											.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	Q	Q	G	N	V	D	A	W	A	I	W	D	P	Y	Y	S	A	A	L	L	Q	G	G	V	R	V	L	K	D	G	T	D	L	N	Q	T	G	S	F	Y	L	A	A	R	P	Y	A	E	K	N	G	A	F	I	Q	G	V	L	A	T	F	S	E	A	D	A	L	T	R	S	Q	R	E	Q	S	I	A	L	L
Template Known Secondary structure				T	T	S	S	S						T	T									S	S							S	T	T	S																	T																					T
Template Predicted Secondary structure
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		250	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	R	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	K	T
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		252	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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