Job Description P37329 Confidence 99.16% Date Thu Jan 5 11:55:15 GMT 2012 Rank 77 Aligned Residues 227 % Identity 11% Template c2w7yA_ PDB info PDB header:sugar-binding protein Chain: A: PDB Molecule:probable sugar abc transporter, sugar-binding PDBTitle: structure of a streptococcus pneumoniae solute-binding2 protein in complex with the blood group a-trisaccharide. Resolution 2.35 Å

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		27	.	.	30	.	.								.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.				.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.																				.													.	.	.
Query SS confidence								.	.	.	.	.	.	.																				.													.	.	.
Query Sequence		G	K	I	T	V	F	.	.	.	.	.	.	.	A	A	A	S	L	T	N	A	M	Q	D	I	A	T	Q	F	K	K	E	.	K	G	V	D	V	V	S	S	F	A	S	S	.	.	.	S	T	L	A	R	Q	I	E	A	G	A	P	A	D	L	F	I	S	A	D	Q	K	W	M	D	Y	A	V	D	K	K	A
Query Conservation								.	.	.	.	.	.	.																				.													.	.	.
Alig confidence								.	.	.	.	.	.	.																				.													.	.	.
Template Conservation
Template Sequence		E	V	L	E	F	Y	H	G	Y	H	H	S	E	D	E	W	P	V	A	K	T	X	R	D	L	Y	D	K	F	A	E	E	H	S	G	V	E	F	K	P	T	P	V	N	G	D	L	K	D	I	X	N	N	K	V	A	S	G	E	F	P	D	V	I	D	L	A	G	N	A	V	S	L	A	A	I	E	Q	K	L
Template Known Secondary structure									S					T	T	T																					S								S	S											T	T	T				S					T	T										T	T
Template Predicted Secondary structure
Template SS confidence
		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
		96	.	.	.																											100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.						.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.						.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.																	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.																	.	.	.	.	.
Query Sequence		I	D	T	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	R	Q	T	L	L	G	N	S	L	V	V	V	A	P	K	A	.	.	.	.	.	S	V	Q	K	D	F	T	I	D	S	K	T	N	W	T	S	.	.	.	.	.	L	L	N	G	G	R	L
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.																	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.																	.	.	.	.	.
Template Conservation
Template Sequence		V	L	D	L	K	P	Y	I	D	S	N	K	L	E	K	N	V	G	L	N	Y	K	Q	N	Q	K	D	G	K	I	Y	T	V	H	E	Q	L	F	T	X	G	L	W	Y	N	K	D	I	F	A	K	A	G	A	K	T	P	D	Q	W	N	T	W	D	D	F	T	Q	A	X	A	S	I	R	K	Q	D	G	V	Y
Template Known Secondary structure		B										T	T						T	T					T			T	T					B		S	B																	T				G	G	G			S													T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
		140	.	.	.	.	.	.	.	.	.	150	.	.	.																											.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	V	G	D	P	E	H	V	P	A	G	I	Y	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	E	A	L	Q	K	L	G	A	W	D	T	L	S	P	K	L	A	P	A	E	D	V	R	G	A	L	A	L	V	E	R	N	E	A	P	L	G	I	V
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	F	G	A	G	E	P	S	I	R	L	F	N	T	V	L	G	T	T	E	N	G	R	K	L	L	D	K	P	L	T	K	E	G	I	E	S	K	E	F	A	D	A	L	K	X	V	X	K	E	I	Q	A	N	G	S	K	N	A	G	G	D	A	N	A	Y	S	K	D	F	Q	E	G	K	S	A	V	F	F	N
Template Known Secondary structure						B	T	T										T	T	S							T	T	S				T	T	T	T	T	S																	T		G	G	G		S	B											T	T	S
Template Predicted Secondary structure
Template SS confidence
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.						.	220	.	.	.	.	.	.	.	.	.	230	.	.		.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure																											.	.	.	.	.															.
Query SS confidence																											.	.	.	.	.															.
Query Sequence		Y	G	S	D	A	V	A	S	K	G	V	K	V	V	A	T	F	P	E	D	S	H	K	K	V	.	.	.	.	.	E	Y	P	V	A	V	V	E	G	H	N	N	A	T	.	V	K	A	F	Y	D	Y	L	K	G	P	Q	A	A	E	I	F	K	R	Y	G
Query Conservation																											.	.	.	.	.															.
Alig confidence																											.	.	.	.	.															.
Template Conservation
Template Sequence		G	V	W	A	S	G	E	X	S	K	N	P	S	L	A	P	G	I	Y	P	A	G	V	A	I	S	S	S	G	G	G	I	T	I	S	S	K	X	S	E	A	K	Q	K	L	A	L	E	F	L	K	Y	X	T	S	D	D	V	Q	K	V	I	F	E	K	V
Template Known Secondary structure			G	G	G					T	T	S	T	T						B	G	G	G													B	S	S	S																T	S										T	S
Template Predicted Secondary structure
Template SS confidence
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions