Job Description P37329 Confidence 29.80% Date Thu Jan 5 11:55:15 GMT 2012 Rank 170 Aligned Residues 208 % Identity 17% Template c2vhaB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:periplasmic binding transport protein; PDBTitle: debp Resolution 1.00 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.													.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.								.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.
Query Sequence		A	D	E	G	K	I	T	V	F	A	A	A	S	L	.	.	.	.	.	.	.	.	.	.	.	.	T	N	A	M	Q	D	I	A	T	Q	F	K	K	E	K	G	.	.	.	.	.	.	.	V	D	V	V	S	S	F	A	S	S	S	T	L	A	R	Q	I	E	A	G	A	P	A	D	L	F	I	S	A	D	Q
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	K	N	G	V	I	V	V	G	H	R	E	S	S	V	P	F	S	Y	Y	D	N	Q	Q	K	V	V	G	Y	S	Q	D	Y	S	N	A	I	V	E	A	V	K	K	K	L	N	K	P	D	L	Q	V	K	L	I	P	I	T	S	Q	N	R	I	P	L	L	Q	N	G	T	F	D	F	E	C	G	S	T	T	N
Template Known Secondary structure					T								S			T	T	T					S	S	S				S																	T	T		T	T										T	T	T							T	T	S		S				S	S		B
Template Predicted Secondary structure
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	W	M	D	Y	A	V	D	K	K	A	I	D	T	A	T	R	Q	T	L	L	G	N	S	L	V	V	V	A	P	K	A	S	V	Q	K	D	F	T	I	D	S	K	T	N	W	T	S	L	L	N	G	G	R	L	A	V	G	D	P	E	H	V	P	A	G	I	Y	A	K	E	A	L	Q	K	L	G	A	W	D
Query Conservation
Alig confidence										.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.								.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.								.	.	.	.	.	.
Template Sequence		N	V	E	R	Q	K	Q	A	.	.	.	.	.	.	A	F	S	D	T	I	F	V	V	G	T	R	L	L	T	K	K	G	G	D	I	K	D	F	A	D	L	.	.	.	.	.	.	.	.	.	K	G	K	A	V	V	V	.	.	.	.	.	.	T	S	G	T	T	S	E	V	L	L	N	K	L	N	E	E	Q
Template Known Secondary structure							T	T		.	.	.	.	.	.																	T	T	S	S		S	S	G	G	G	G	.	.	.	.	.	.	.	.	.	T	T						.	.	.	.	.	.		T	T	S													T
Template Predicted Secondary structure										.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.								.	.	.	.	.	.
Template SS confidence
		94	.	.	.	.	.	100	.							.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.										.	130	.	.	.	.	.							.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.				200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230			.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.																																.	.
Query SS confidence																																					.	.	.																																.	.
Query Sequence		T	L	S	P	K	L	A	P	A	E	D	V	R	G	A	L	A	L	V	E	R	N	E	A	P	L	G	I	V	Y	G	S	D	A	V	.	.	.	A	S	K	G	V	K	V	V	A	T	F	P	E	D	S	H	K	K	V	E	Y	P	V	A	V	V	E	G	H	N	N	.	.	A	T	V	K	A	F	Y	D	Y
Query Conservation																																					.	.	.																																.	.
Alig confidence																																					.	.	.																																.	.
Template Conservation
Template Sequence		K	M	N	M	R	I	I	S	A	K	D	H	G	D	S	F	R	T	L	E	S	G	R	A	V	A	F	M	M	D	D	A	L	L	A	G	E	R	A	K	A	K	K	P	D	N	W	D	I	V	G	K	P	Q	S	Q	E	A	Y	G	C	M	L	R	K	D	D	P	Q	F	K	K	L	M	D	D	T	I	A	Q
Template Known Secondary structure		T									S	S										T	T	S		S														T	T	S	S	S	G	G	G					S			S											T	T
Template Predicted Secondary structure
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		240	.	.	.		.	.	.	.	.	.	250	.	.
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		L	K	G	P	.	Q	A	A	E	I	F	K	R	Y
Query Conservation						.
Alig confidence						.
Template Conservation
Template Sequence		V	Q	T	S	G	E	A	E	K	W	F	D	K	W
Template Known Secondary structure					T	T
Template Predicted Secondary structure
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions