Job Description P37329 Confidence 75.49% Date Thu Jan 5 11:55:15 GMT 2012 Rank 160 Aligned Residues 195 % Identity 11% Template c2v25B_ PDB info PDB header:receptor Chain: B: PDB Molecule:major cell-binding factor; PDBTitle: structure of the campylobacter jejuni antigen peb1a, an2 aspartate and glutamate receptor with bound aspartate Resolution 1.49 Å

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		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.				.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure																			.	.	.
Query SS confidence																			.	.	.
Query Sequence		A	S	L	T	N	A	M	Q	D	I	A	T	Q	F	K	K	E	.	.	.	K	G	V	D	V	V	S	S	F	A	S	S	S	T	L	A	R	Q	I	E	A	G	A	P	A	D	L	F	I	S	A	D	Q	K	W	M	D	Y	A	V	D	K	K	A	I	D	T	A	T	R	Q	T	L	L	G	N	S	L	V	V
Query Conservation																			.	.	.
Alig confidence																			.	.	.																																										.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.
Template Sequence		G	E	I	K	G	F	E	V	D	V	A	K	L	L	A	K	S	I	L	G	D	D	K	K	I	K	L	V	A	V	N	A	K	T	R	G	P	L	L	D	N	G	S	V	D	A	V	I	A	T	F	T	I	T	P	E	R	K	R	I	Y	.	.	.	.	.	.	N	F	S	E	P	Y	Y	Q	D	A	I	G	L
Template Known Secondary structure		T				S															S		T	T	S								T	T	T							T	T	S		S				S	S		B							T	T		.	.	.	.	.	.				S		S
Template Predicted Secondary structure																																																															.	.	.	.	.	.
Template SS confidence
		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.							.	.	.	.	.	.	100	.	.	.	.	.	.
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	P	K	A	S	V	Q	K	D	F	T	I	D	S	K	T	N	W	T	S	L	L	N	G	G	R	L	A	V	G	D	P	E	H	V	P	A	G	I	Y	A	K	E	A	L	Q	K	L	G	A	W	D	T	L	S	P	K	L	A	P	A	E	D	V	R	G	A	L	A	L	V	E	R	N	E	A	P	L	G
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.
Template Sequence		L	V	L	K	E	K	K	Y	K	S	L	A	D	M	.	.	.	.	.	.	.	.	.	.	K	G	A	N	I	G	V	A	Q	A	A	T	T	K	K	A	I	G	E	A	A	K	K	I	G	.	.	.	.	.	I	D	V	K	F	S	E	F	P	D	Y	P	S	I	K	A	A	L	D	A	K	R	V	D	A	F
Template Known Secondary structure					G	G	G				S	G	G	G	G	.	.	.	.	.	.	.	.	.	.	T	T							T	T		S													T	.	.	.	.	.									S	S										T	T	S	S	S
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120											.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.						.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230			.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure																																									.	.
Query SS confidence																																									.	.
Query Sequence		I	V	Y	G	S	D	A	V	A	S	K	G	V	K	V	V	A	T	F	P	E	D	S	H	K	K	V	E	Y	P	V	A	V	V	E	G	H	N	N	.	.	A	T	V	K	A	F	Y	D	Y	L	K	G	P	Q	A	A	E	I	F	K	R	Y	G
Query Conservation																																									.	.
Alig confidence																									.	.															.	.											.
Template Conservation																									.	.																											.
Template Sequence		S	V	D	K	S	I	L	L	G	Y	V	D	D	K	S	E	I	L	P	D	S	F	E	.	.	P	Q	S	Y	G	I	V	T	K	K	D	D	P	A	F	A	K	Y	V	D	D	F	V	K	E	H	.	K	N	E	I	D	A	L	A	K	K	W	G
Template Known Secondary structure									T	T	T			T	T					S				S	.	.										T	T															T	.											T	T
Template Predicted Secondary structure																									.	.																											.
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.			.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220		.	.	.	.	.	.	.	.	.	230	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions