Job Description P37329 Confidence 97.25% Date Thu Jan 5 11:55:15 GMT 2012 Rank 120 Aligned Residues 214 % Identity 13% Template c2q89A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:putative abc transporter amino acid-binding protein; PDBTitle: crystal structure of ehub in complex with hydroxyectoine Resolution 2.30 Å

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		24	.	.	.	.	.	30	.	.	.	.												.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	D	E	G	K	I	T	V	F	A	A	.	.	.	.	.	.	.	.	.	.	.	A	S	L	T	N	A	M	Q	D	I	A	T	Q	F	K	K	E	K	G	V	D	V	V	S	S	F	A	S	S	S	T	L	A	R	Q	I	E	A	G	A	P	A	D	L	F	I	S	A	D	Q	K	W	M	D	Y	A	V	D
Query Conservation													.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	E	Q	G	F	A	R	I	A	I	A	N	E	P	P	F	T	A	V	G	A	D	G	K	V	S	G	A	A	P	D	V	A	R	E	I	F	K	R	L	G	V	A	D	V	V	A	S	I	S	E	Y	G	A	M	I	P	G	L	Q	A	G	R	H	D	A	I	T	A	G	L	F	M	K	P	E	R	C	A	A
Template Known Secondary structure															T	T	T	S				T	T					S													T	T											G	G	G							T	T	S		S				S			B							T	T
Template Predicted Secondary structure
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	K	A	I	D	T	A	T	R	Q	T	L	L	G	N	S	L	V	V	V	A	P	K	A	S	V	Q	K	D	F	T	I	D	S	K	T	N	W	T	S	L	L	N	G	G	R	L	A	V	G	D	P	E	H	V	P	A	G	I	Y	A	K	E	A	L	Q	K	L	G	A	W	D	T	L	S	P	K	L	A	P
Query Conservation
Alig confidence														.	.	.	.	.																						.	.	.	.	.													.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.																						.	.	.	.	.													.	.	.	.	.	.	.	.
Template Sequence		V	A	Y	S	Q	P	I	L	C	D	A	E	.	.	.	.	.	A	F	A	L	K	K	G	N	P	L	G	L	K	S	Y	K	D	I	A	D	N	.	.	.	.	.	P	D	A	K	I	G	A	P	G	G	G	T	.	.	.	.	.	.	.	.	E	E	K	L	A	L	E	A	G	V	P	R	D	R	V	I	V
Template Known Secondary structure		S				S								.	.	.	.	.						T	T		T	T				B						T		.	.	.	.	.	T	T							T	T	S		.	.	.	.	.	.	.	.									T			G	G	G
Template Predicted Secondary structure														.	.	.	.	.																						.	.	.	.	.													.	.	.	.	.	.	.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100						.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.						.	.	.	.	.	.	.	.	130	.	.	.									.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.					.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230			.	.	.	.	.	.	.	.	.	240	.	.	.		.	.
Predicted Secondary structure																												.	.	.	.																																	.	.														.
Query SS confidence																												.	.	.	.																																	.	.														.
Query Sequence		A	E	D	V	R	G	A	L	A	L	V	E	R	N	E	A	P	L	G	I	V	Y	G	S	D	A	.	.	.	.	V	A	S	K	G	V	K	V	V	A	T	F	P	E	D	S	H	K	K	V	E	Y	P	V	A	V	V	E	G	H	N	N	.	.	A	T	V	K	A	F	Y	D	Y	L	K	G	P	.	Q	A
Query Conservation																												.	.	.	.																																	.	.														.
Alig confidence																												.	.	.	.																																	.	.														.
Template Conservation
Template Sequence		V	P	D	G	Q	S	G	L	K	M	L	Q	D	G	R	I	D	V	Y	S	L	P	V	L	S	I	N	D	L	V	S	K	A	N	D	P	N	V	E	V	L	A	P	V	E	G	A	P	V	Y	C	D	G	A	A	F	R	K	G	D	E	A	L	R	D	A	F	D	V	E	L	A	K	L	K	E	S	G	E	F
Template Known Secondary structure			S	S											T	S		S																	T		T	T						S		B	T						B						G	G	G																		T
Template Predicted Secondary structure
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		246	.	.	.	250	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	I	F	K	R	Y	G	F	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	K	I	I	E	P	Y	G	F	S
Template Known Secondary structure						G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		231	.	.	.	.	.	.	.	.	240

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions