Job Description P37329 Confidence 96.18% Date Thu Jan 5 11:55:15 GMT 2012 Rank 132 Aligned Residues 212 % Identity 15% Template c2q2aD_ PDB info PDB header:transport protein Chain: D: PDB Molecule:artj; PDBTitle: crystal structures of the arginine-, lysine-, histidine-2 binding protein artj from the thermophilic bacterium3 geobacillus stearothermophilus Resolution 1.79 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.												.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	V	A	G	N	A	L	A	D	E	G	K	I	T	V	F	A	A	A	S	L	.	.	.	.	.	.	.	.	.	.	.	T	N	A	M	Q	D	I	A	T	Q	F	K	K	E	K	G	V	D	V	V	S	S	F	A	S	S	S	T	L	A	R	Q	I	E	A	G	A	P	A	D	L	F	I	S	A	D	Q	K
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	S	G	G	D	G	G	A	T	K	K	K	V	V	V	G	T	D	A	A	F	A	P	F	E	Y	M	Q	K	G	K	I	V	G	F	D	V	D	L	L	D	A	V	M	K	A	A	G	L	D	Y	E	L	K	N	I	G	W	D	P	L	F	A	S	L	Q	S	K	E	V	D	M	G	I	S	G	I	T	I	T
Template Known Secondary structure			T	T	S		T	T	S	S												B	T	T	T	B				T	T				S													T	T																				T	S	S					S	S		B
Template Predicted Secondary structure
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	M	D	Y	A	V	D	K	K	A	I	D	T	A	T	R	Q	T	L	L	G	N	S	L	V	V	V	A	P	K	A	S	V	Q	K	D	F	T	I	D	S	K	T	N	W	T	S	L	L	N	G	G	R	L	A	V	G	D	P	E	H	V	P	A	G	I	Y	A	K	E	A	L	Q	K	L	G	A	W	D	T
Query Conservation
Alig confidence									.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.
Template Sequence		D	E	R	K	Q	S	Y	.	.	.	.	.	.	D	F	S	D	P	Y	F	E	A	T	Q	V	I	L	V	K	Q	G	S	P	V	K	N	A	L	D	L	K	.	.	.	.	.	.	.	.	.	G	K	T	I	G	V	Q	N	A	T	T	G	Q	E	A	A	E	K	.	.	.	.	.	.	.	.	.	L	F	G
Template Known Secondary structure						T	T		.	.	.	.	.	.				S													T	T					S	G	G	G	G	T	.	.	.	.	.	.	.	.	.	T	S						T	T	S									.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure									.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.
Template SS confidence
		91	.	.	.	.	.	.							.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.										.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.										.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.				.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230			.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure																																			.	.	.																																	.	.
Query SS confidence																																			.	.	.																																	.	.
Query Sequence		L	S	P	K	L	A	P	A	E	D	V	R	G	A	L	A	L	V	E	R	N	E	A	P	L	G	I	V	Y	G	S	D	A	.	.	.	V	A	S	K	G	V	K	V	V	A	T	F	P	E	D	S	H	K	K	V	E	Y	P	V	A	V	V	E	G	H	N	N	.	.	A	T	V	K	A	F	Y	D	Y	L
Query Conservation																																			.	.	.																																	.	.
Alig confidence																																			.	.	.																																	.	.
Template Conservation
Template Sequence		K	G	P	H	I	K	K	F	E	T	T	V	V	A	I	M	E	L	L	N	G	G	V	D	A	V	I	T	D	N	A	V	A	N	E	Y	V	K	N	N	P	N	K	K	L	Q	V	I	E	D	P	K	N	F	A	S	E	Y	Y	G	M	I	F	P	K	N	S	E	L	K	A	K	V	D	E	A	L	K	N	V
Template Known Secondary structure		S	S	T	T					S	S										T	T	S	S	S																	G	G	G								T	T	T	S											T	T		T
Template Predicted Secondary structure
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
		241	.	.		.	.	.	.	.	.	250	.	.
Predicted Secondary structure					.
Query SS confidence					.
Query Sequence		K	G	P	.	Q	A	A	E	I	F	K	R	Y
Query Conservation					.
Alig confidence					.
Template Conservation
Template Sequence		I	N	S	G	K	Y	T	E	I	Y	K	K	W
Template Known Secondary structure					T
Template Predicted Secondary structure
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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