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Job DescriptionP37329
Confidence96.18%DateThu Jan 5 11:55:15 GMT 2012
Rank132Aligned Residues212
% Identity15%Templatec2q2aD_
PDB info PDB header:transport proteinChain: D: PDB Molecule:artj; PDBTitle: crystal structures of the arginine-, lysine-, histidine-2 binding protein artj from the thermophilic bacterium3 geobacillus stearothermophilus
Resolution1.79 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   17..20.........30....... ..40.........50.........60.........70.........80.....
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Query Sequence  AVAGNALADEGKITVFAAASL. . . . . . . . . . . TNAMQDIATQFKKEKGVDVVSSFASSSTLARQIEAGAPADLFISADQK
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Template Sequence  SSGGDGGATKKKVVVGTDAAFAPFEYMQKGKIVGFDVDLLDAVMKAAGLDYELKNIGWDPLFASLQSKEVDMGISGITIT
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   11........20.........30.........40.........50.........60.........70.........80.........90
 
   86...90.........100.........110.........120.........130.........140.........150.........160.....
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Query Sequence  WMDYAVDKKAIDTATRQTLLGNSLVVVAPKASVQKDFTIDSKTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKLGAWDT
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Template Sequence  DERKQSY. . . . . . DFSDPYFEATQVILVKQGSPVKNALDLK. . . . . . . . . GKTIGVQNATTGQEAAEK. . . . . . . . . LFG
Template Known Secondary structure  TT......
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   91...... ..100.........110.........120..... ....130.........140... ...
 
   166...170.........180.........190........ .200.........210.........220.........230 .........240
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Query Sequence  LSPKLAPAEDVRGALALVERNEAPLGIVYGSDA. . . VASKGVKVVATFPEDSHKKVEYPVAVVEGHNN. . ATVKAFYDYL
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Template Sequence  KGPHIKKFETTVVAIMELLNGGVDAVITDNAVANEYVKNNPNKKLQVIEDPKNFASEYYGMIFPKNSELKAKVDEALKNV
Template Known Secondary structure  SSTTSSTTSSS
GGG


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   147..150.........160.........170.........180.........190.........200.........210.........220......
 
   241.. ......250..
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Query Sequence  KGP. QAAEIFKRY
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Template Sequence  INSGKYTEIYKKW
Template Known Secondary structure  T
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   227..230.........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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