Job Description P37329 Confidence 99.50% Date Thu Jan 5 11:55:15 GMT 2012 Rank 70 Aligned Residues 226 % Identity 11% Template c2fncA_ PDB info PDB header:sugar binding protein Chain: A: PDB Molecule:maltose abc transporter, periplasmic maltose-binding PDBTitle: thermotoga maritima maltotriose binding protein bound with2 maltotriose. Resolution 1.70 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70					.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure																																													.	.	.	.																																.	.
Query SS confidence																																													.	.	.	.																																.	.
Query Sequence		K	I	T	V	F	A	A	A	S	L	T	N	A	M	Q	D	I	A	T	Q	F	K	K	E	K	G	V	D	V	V	S	S	F	A	S	S	S	T	L	A	R	Q	I	.	.	.	.	E	A	G	A	P	A	D	L	F	I	S	A	D	Q	K	W	M	D	Y	A	V	D	K	K	A	I	D	T	A	T	R	.	.
Query Conservation																																													.	.	.	.																																.	.
Alig confidence																																													.	.	.	.												.																				.	.
Template Conservation																																																												.
Template Sequence		K	L	T	I	W	C	S	E	K	Q	V	D	I	L	Q	K	L	G	E	E	F	K	A	K	Y	G	I	P	V	E	V	Q	Y	V	D	F	G	S	I	K	S	K	F	L	T	A	A	P	Q	G	Q	G	A	D	I	I	V	G	.	A	H	D	W	V	G	E	L	A	V	N	G	L	I	E	P	I	P	N	F	S
Template Known Secondary structure																											S																					G	G	G	T		S		S					.		G	G	G							T	T		B							G
Template Predicted Secondary structure																																																												.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.		.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
																							102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.								.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	T	L	L	G	N	S	L	V	V	V	A	P	K	A	S	V	Q	K	D	F	T	I	D	S	K	T	N	W	T	S	.	.	.	.	.	.	.	L	L	N	G	G	R	L	A	V	G	D	P	E	H	V	P	A	G	I	Y	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.											.	.	.	.	.	.	.
Template Conservation																																										.	.
Template Sequence		D	L	K	N	F	Y	D	T	A	L	K	A	F	S	Y	G	G	K	L	Y	G	V	P	Y	A	M	E	A	V	A	L	I	Y	N	K	D	Y	V	D	S	.	.	V	P	K	T	M	D	E	L	I	E	K	A	K	Q	I	D	E	E	Y	G	G	E	V	R	G	F	I	Y	D	V	A	N	F	Y	F	S	A	P
Template Known Secondary structure		G	G	G	G	B								T			T	T																		T	T	T		S	S	.	.			S	B															T	T	T	S	S							T	T
Template Predicted Secondary structure																																										.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.			.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		154	.	.	.	.	.	160	.	.	.	.																													.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	E	A	L	Q	K	L	G	A	W	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	L	S	P	K	L	A	P	A	E	D	V	R	G	A	L	A	L	V	E	R	N	E	A	P	L	G	I	V	Y	G	S	D	A	V	A	S	K	G	V	K
Query Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	I	L	G	Y	G	G	Y	V	F	K	E	T	P	Q	G	L	D	V	T	D	I	G	L	A	N	E	G	A	V	K	G	A	K	L	I	K	R	M	I	D	E	G	V	L	T	P	G	D	N	Y	G	T	M	D	S	M	F	K	E	G	L	A	A	M	I	I	N	G	L	W	A	I	K	S	Y	K	D	A	G
Template Known Secondary structure						T	T								T	T									T	T	S																T	T	S	S		T	T												T	T									G	G	G							T	T
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		206	.	.	.	210										.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.		.	.	.	.	.		.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.																							.						.
Query SS confidence							.	.	.	.	.	.	.	.	.																							.						.
Query Sequence		V	V	A	T	F	.	.	.	.	.	.	.	.	.	P	E	D	S	H	K	K	V	E	Y	P	V	A	V	V	E	G	H	N	N	A	T	.	V	K	A	F	Y	.	D	Y	L	K	G	P	Q	A	A	E	I	F	K	R	Y	G	F	T	I
Query Conservation							.	.	.	.	.	.	.	.	.																							.						.
Alig confidence							.	.	.	.	.	.	.	.	.																							.						.
Template Conservation
Template Sequence		I	N	Y	G	V	A	P	I	P	E	L	E	P	G	V	P	A	K	P	F	V	G	V	Q	G	F	M	I	N	A	K	S	P	N	K	V	I	A	M	E	F	L	T	N	F	I	A	R	K	E	T	M	Y	K	I	Y	L	A	D	P	R	L
Template Known Secondary structure											B	S	B	T	T	B														B	T	T		T	T											T	T	T	S											S		S
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions