Job Description P37329 Confidence 98.20% Date Thu Jan 5 11:55:15 GMT 2012 Rank 97 Aligned Residues 224 % Identity 14% Template c2dvzA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:putative exported protein; PDBTitle: structure of a periplasmic transporter Resolution 2.30 Å

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		26	.	.	.	30	.	.	.	.				.	.	.	.	.	40	.	.	.		.	.	.	.	.	.	50	.	.	.	.	.	.	.	.			.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.					.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure											.	.	.										.																.	.																				.	.	.	.
Query SS confidence											.	.	.										.																.	.																				.	.	.	.
Query Sequence		E	G	K	I	T	V	F	A	A	.	.	.	A	S	L	T	N	A	M	Q	D	.	I	A	T	Q	F	K	K	E	K	G	V	D	V	V	S	.	.	S	F	A	S	S	S	T	L	A	R	Q	I	E	A	G	A	P	A	D	.	.	.	.	L	F	I	S	A	D	Q	K	W	M	D	Y	A	V	D	K	K	A
Query Conservation											.	.	.										.																.	.																				.	.	.	.
Alig confidence											.	.	.										.																.	.																				.	.	.	.
Template Conservation
Template Sequence		S	K	A	I	R	V	I	V	P	F	A	P	G	G	S	T	D	I	I	A	R	L	V	T	Q	R	X	S	Q	E	L	G	Q	P	X	V	V	E	N	K	G	G	A	G	G	A	I	G	A	S	E	A	A	R	A	E	P	D	G	Y	T	L	S	I	A	T	V	S	T	X	A	V	N	P	A	C	R	P	K	D
Template Known Secondary structure		S	S							S	S		T	T	S																		T	S										G	G	G										S		T	T	S	S											T						S	T	T	T
Template Predicted Secondary structure
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		96	.	.							.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.			.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.																																								.	.
Query SS confidence					.	.	.	.	.	.																																								.	.
Query Sequence		I	D	T	.	.	.	.	.	.	A	T	R	Q	T	L	L	G	N	S	L	V	V	V	A	P	K	A	S	V	Q	K	D	F	T	I	D	S	K	T	N	W	T	S	L	L	N	G	G	.	.	R	L	A	V	G	D	P	E	H	V	P	A	G	I	Y	A	K	E	A	L	Q	K	L	G	A	W	D	T	L	S
Query Conservation					.	.	.	.	.	.																																								.	.
Alig confidence					.	.	.	.	.	.																					.	.	.	.	.															.	.																												.	.	.
Template Conservation																															.	.	.	.	.																																												.	.	.
Template Sequence		L	P	Y	D	P	I	K	D	F	Q	P	V	T	N	F	A	N	T	A	N	V	V	A	V	N	P	K	F	P	.	.	.	.	.	A	K	D	F	K	G	F	L	E	E	L	K	K	N	P	G	K	Y	S	Y	G	S	S	G	T	C	G	V	L	H	L	X	G	E	S	F	K	X	A	T	G	T	D	.	.	.
Template Known Secondary structure			S			T	T	T	S																		T	T	S	S	.	.	.	.	.		S	S										T	S	T	T	T						S		T	T	S														T			.	.	.
Template Predicted Secondary structure																															.	.	.	.	.																																												.	.	.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.						.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.				.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.																			.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	K	L	A	P	A	E	D	V	R	G	A	L	A	L	V	E	R	N	E	A	P	L	G	I	V	Y	G	S	D	A	.	.	.	V	A	S	K	G	V	K	V	V	A	T	F	P	E	D	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	K	K	V	E	Y	P	V	A	V	V	E
Query Conservation																																	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	V	H	V	P	Y	K	G	S	G	P	A	V	A	D	A	V	G	G	Q	I	E	L	I	F	D	N	L	P	S	S	X	P	Q	I	Q	A	G	K	L	R	A	X	A	I	A	W	P	T	R	I	D	A	I	K	D	V	P	T	F	A	D	A	G	F	P	V	L	N	Q	P	V	W	Y	G	L	L	A	P	K
Template Known Secondary structure								S	S											T	S	S	S															T	T	S	S							S	S	S			G	G	G	T	T	S		B	T	T	T	T	T		G	G	G												T
Template Predicted Secondary structure
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		227	.	.	230	.					.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.
Query SS confidence							.	.	.	.
Query Sequence		G	H	N	N	A	.	.	.	.	T	V	K	A	F	Y	D	Y	L	K	G	P	Q	A	A	E	I	F	K	R	Y	G	F	T	I	K
Query Conservation							.	.	.	.
Alig confidence							.	.	.	.
Template Conservation
Template Sequence		G	T	P	X	D	V	V	N	K	L	R	D	A	A	V	V	A	L	K	D	P	K	V	I	K	A	L	D	D	Q	G	S	A	P	S
Template Known Secondary structure		T																		T												T
Template Predicted Secondary structure
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions