Job Description P37329 Confidence 99.47% Date Thu Jan 5 11:55:15 GMT 2012 Rank 71 Aligned Residues 229 % Identity 17% Template c2b3fD_ PDB info PDB header:sugar binding protein Chain: D: PDB Molecule:glucose-binding protein; PDBTitle: thermus thermophilus glucose/galactose binding protein2 bound with galactose Resolution 1.56 Å

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		28	.	30	.	.	.	.			.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.	.								.	.	.	.	.	70	.	.	.	.	.	.	.	.	.		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure									.	.																		.														.	.	.	.	.	.	.																.
Query SS confidence									.	.																		.														.	.	.	.	.	.	.																.
Query Sequence		K	I	T	V	F	A	A	.	.	A	S	L	T	N	A	M	Q	D	I	A	T	Q	F	K	K	E	.	K	G	V	D	V	V	S	S	F	A	S	S	S	.	.	.	.	.	.	.	T	L	A	R	Q	I	E	A	G	A	P	A	D	L	F	.	I	S	A	D	Q	K	W	M	D	Y	A	V	D	K	K	A	I
Query Conservation									.	.																		.														.	.	.	.	.	.	.																.
Alig confidence									.	.																		.														.	.	.	.	.	.	.																.
Template Conservation
Template Sequence		K	L	E	I	F	S	W	W	A	G	D	E	G	P	A	L	E	A	L	I	R	L	Y	K	Q	K	Y	P	G	V	E	V	I	N	A	T	V	T	G	G	A	G	V	N	A	R	A	V	L	K	T	R	M	L	G	G	D	P	P	D	T	F	Q	V	H	A	G	M	E	L	I	G	T	W	V	V	A	N	R	M
Template Known Secondary structure								S			G	G	G																T	T											G	G	G													T	T				S						T	T					T	T	T	T	T	T	T		B
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		97	.	.																												100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.				.	120	.	.	.	.	.	.	.	.	.	130	.	.						.	.	.	.	.	.	.	140	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.															.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.															.	.	.	.	.
Query Sequence		D	T	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	R	Q	T	L	L	G	N	S	L	V	V	V	A	P	K	A	S	V	.	.	.	Q	K	D	F	T	I	D	S	K	T	N	W	T	S	.	.	.	.	.	L	L	N	G	G	R	L	A	V
Query Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.															.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.															.	.	.	.	.
Template Conservation
Template Sequence		E	D	L	S	A	L	F	R	Q	E	G	W	L	Q	A	F	P	K	G	L	I	D	L	I	S	Y	K	G	G	I	W	S	V	P	V	N	I	H	R	S	N	V	M	W	Y	L	P	A	K	L	K	G	W	G	V	N	P	P	R	T	W	D	K	F	L	A	T	C	Q	T	L	K	Q	K	G	L	E	A	P	L
Template Known Secondary structure												T		T	T	T	S											T	T									B			S														T					S	S														T	T		S
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		142	.	.	.	.	.	.	.	150	.	.	.																													.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	D	P	E	H	V	P	A	G	I	Y	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	E	A	L	Q	K	L	G	A	W	D	T	L	S	P	K	L	A	P	A	E	D	V	R	G	A	L	A	L	V	E	R	N	E	A	P	L	G	I	V
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	L	G	E	N	W	T	Q	Q	H	L	W	E	S	V	A	L	A	V	L	G	P	D	D	W	N	N	L	W	N	G	K	L	K	F	T	D	P	K	A	V	R	A	W	E	V	F	G	R	V	L	D	C	A	N	K	D	A	A	G	L	S	W	Q	Q	A	V	D	R	V	V	Q	G	K	A	A	F	N	I	M
Template Known Secondary structure					S																										T	T	S	S		T	T	S															T	T	B		T	T	G	G	G												T	T	S		S
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		194	.	.	.	.	.	200	.	.								.	.	.	.	.	.	.	210				.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.		.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.									.	.	.																							.
Query SS confidence											.	.	.	.	.	.	.									.	.	.																							.
Query Sequence		Y	G	S	D	A	V	A	S	K	.	.	.	.	.	.	.	G	V	K	V	V	A	T	F	.	.	.	P	E	D	S	H	K	K	V	E	Y	P	V	A	V	V	E	G	H	N	N	A	T	.	V	K	A	F	Y	D	Y	L	K	G	P	Q	A	A	E	I	F	K	R	Y	G	F	T	I
Query Conservation											.	.	.	.	.	.	.									.	.	.																							.
Alig confidence											.	.	.	.	.	.	.									.	.	.																							.
Template Conservation
Template Sequence		G	D	W	A	A	G	Y	M	T	T	T	L	K	L	K	P	G	T	D	F	A	W	A	P	S	P	G	T	Q	G	V	F	M	M	L	S	D	S	F	G	L	P	K	G	A	K	N	R	Q	N	A	I	N	W	L	R	L	V	G	S	K	E	G	Q	D	T	S	N	P	L	K	G	S	I
Template Known Secondary structure			T									T	T				B	T	T	T	B						T	T		T	T												B	T	T		T	T												T	S												S		B
Template Predicted Secondary structure
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions