Job Description P0A8F4 Confidence 98.41% Date Thu Jan 5 11:07:42 GMT 2012 Rank 133 Aligned Residues 207 % Identity 16% Template c3exaD_ PDB info PDB header:transferase Chain: D: PDB Molecule:trna delta(2)-isopentenylpyrophosphate PDBTitle: crystal structure of the full-length trna2 isopentenylpyrophosphate transferase (bh2366) from3 bacillus halodurans, northeast structural genomics4 consortium target bhr41. Resolution 2.30 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.										.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.	.	.	.	.
Query Sequence		Q	C	V	I	I	G	I	A	G	A	S	A	S	G	K	S	L	I	A	S	T	L	Y	R	E	L	R	E	Q	V	G	D	E	H	I	G	V	I	P	E	D	C	Y	Y	K	D	Q	S	H	L	S	M	E	E	R	V	K	.	.	.	.	.	.	.	.	.	T	N	Y	D	H	P	S	A	M	D	H	S	L	L
Query Conservation																																																											.	.	.	.	.	.	.	.	.
Alig confidence																																																											.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	E	K	L	V	A	I	V	G	P	T	A	V	G	K	T	K	T	S	V	X	L	A	K	R	L	N	G	E	V	I	S	G	D	S	X	Q	V	Y	R	G	X	D	I	G	T	A	K	I	T	A	E	E	X	D	G	V	P	H	H	L	I	D	I	K	D	P	S	E	S	F	S	V	A	D	F	Q	D	L	A
Template Known Secondary structure												T	T	S	S											T	T	T								T	T	T	T	B	T	T			T	T	T	T								T	T					S	S	S		B		T	T	S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.																																										.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	E	H	L	Q	A	L	K	R	G	S	A	I	D	L	P	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	S	Y	V	E	H	T	R	M	K	E	T	V	T	V	E	P	K	K	V	I	I
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	P	L	I	T	E	I	H	E	R	G	R	L	P	F	L	V	G	G	T	G	L	Y	V	N	A	V	I	H	Q	F	N	L	G	D	I	R	A	D	E	D	Y	R	H	E	L	E	A	F	V	N	S	Y	G	V	Q	A	L	H	D	K	L	S	K	I	D	P	K	A	A	A	A	I	H	P	N	N	Y	R	R
Template Known Secondary structure											T	T																		T	T																							S											T	S						T	T	S		T	T
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.																																					.	.	.	.	.	.	160
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	E	G	I	L	L	L	T	D	A	R	L	R	D	E	L	N	F	S	I	F	V	D	T	P	L	D	I	C	L	M	R	R	I	K	R	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	N	E	R	G	R	S
Query Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	I	R	A	L	E	I	I	K	L	T	G	S	P	Y	N	L	V	X	I	G	L	T	X	E	R	D	V	L	Y	D	R	I	N	R	R	V	D	Q	X	V	E	E	G	L	I	D	E	A	K	K	L	Y	D	R	G	I	R	D	C	Q	S	V	Q	A	I	G	Y	K	E	X	Y	D	Y	L	D	G	N	V	T
Template Known Secondary structure																S																													T											T	T			S	S					S	T	T	T								T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190		.	.	.	.	.		.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure																																.						.
Query SS confidence																																.						.
Query Sequence		M	D	S	V	M	A	Q	Y	Q	K	T	V	R	P	M	F	L	Q	F	I	E	P	S	K	Q	Y	A	D	I	I	.	V	P	R	G	G	.	K	N	R	I	A	I	D	I	L	K	A	K	I	S	Q	F	F	E
Query Conservation																																.						.
Alig confidence																																.						.
Template Conservation
Template Sequence		L	E	E	A	I	D	T	L	K	R	N	S	R	R	Y	A	K	R	Q	L	T	W	F	R	N	K	A	N	V	T	W	F	D	X	T	D	V	D	F	D	K	K	I	X	E	I	H	N	F	I	A	G	K	L	E
Template Known Secondary structure																										T	S	S	S								S
Template Predicted Secondary structure
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions