Job Description P76117 Confidence 99.95% Date Thu Jan 5 12:19:09 GMT 2012 Rank 54 Aligned Residues 188 % Identity 18% Template c3lypA_ PDB info PDB header:transcription Chain: A: PDB Molecule:stringent starvation protein a; PDBTitle: structure of stringent starvation protein a homolog from pseudomonas2 fluorescens Resolution 1.60 Å

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		2	.	.	.	.	.	.	.	10	.		.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure												.																																																																					.
Query SS confidence												.																																																																					.
Query Sequence		I	K	V	Y	G	V	P	G	W	G	.	S	T	I	S	E	L	M	L	T	L	A	D	I	P	Y	Q	F	V	D	V	S	G	F	D	H	E	G	A	S	R	E	L	L	K	T	L	N	P	L	C	Q	V	P	T	L	A	L	E	N	D	E	I	M	T	E	T	A	A	I	A	L	M	V	L	D	R	R	P	.
Query Conservation												.																																																																					.
Alig confidence												.																						.	.	.	.	.	.	.																			.	.																					.
Template Conservation																																		.	.	.	.	.	.	.																			.	.
Template Sequence		L	A	C	Y	S	D	P	A	D	H	Y	S	H	R	V	R	I	V	L	A	E	K	G	V	S	A	E	I	I	S	V	E	.	.	.	.	.	.	.	Q	P	P	K	L	I	E	V	N	P	Y	G	S	L	P	T	L	V	.	.	D	R	L	A	L	W	E	S	T	V	V	X	E	Y	L	D	E	R	Y	P	H
Template Known Secondary structure								T	T															T										.	.	.	.	.	.	.										T	T			S	S				.	.							S												S		S
Template Predicted Secondary structure																																		.	.	.	.	.	.	.																			.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40								.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.			.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	A	P	P	V	G	R	A	E	R	Q	L	F	Q	R	L	L	V	W	L	V	A	N	V	Y	P	T	F	T	F	A	D	Y	P	E	R	W	A	P	D	A	P	E	Q	L	K	K	N	V	I	E	Y	R	K	S	L	Y	I	W	L	N	S	Q	L	T	A	E	P	Y	A	F	G	E	Q	L	T	L	V	D
Query Conservation
Alig confidence																																			.	.	.	.	.
Template Conservation																																			.	.	.	.	.
Template Sequence		P	P	L	L	P	V	Y	P	V	A	R	A	N	S	R	L	L	I	H	R	I	Q	R	D	W	C	G	Q	V	D	L	I	L	.	.	.	.	.	D	P	R	T	K	E	A	A	R	V	Q	A	R	K	E	L	R	E	S	L	T	G	V	S	P	L	F	A	D	K	P	F	F	L	S	E	E	Q	S	L	V	D
Template Known Secondary structure		S			S		S	S																		T									.	.	.	.	.		T	T	S																				G	G	G	G	G	T	S	S	B	T	T	B	S	S
Template Predicted Secondary structure																																			.	.	.	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.						.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.		.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure																			.
Query SS confidence																			.
Query Sequence		C	Y	L	C	T	M	R	T	W	G	P	G	H	E	W	F	Q	.	D	N	A	T	N	I	S	A	I	A	D	A	V	C	Q	L	P	K	L	Q	E	V	L	K	R	N	E
Query Conservation																			.
Alig confidence																			.
Template Conservation
Template Sequence		C	C	L	L	P	I	L	W	R	L	P	V	L	G	I	E	L	P	R	Q	A	K	P	L	L	D	Y	X	E	R	Q	F	A	R	E	A	F	Q	A	S	L	S	G	V	E
Template Known Secondary structure										T	T	T	T	T	T					G	G	G													S
Template Predicted Secondary structure
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions