Job Description P76117 Confidence 99.96% Date Thu Jan 5 12:19:09 GMT 2012 Rank 30 Aligned Residues 187 % Identity 21% Template c3lykA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:stringent starvation protein a homolog; PDBTitle: structure of stringent starvation protein a homolog from2 haemophilus influenzae Resolution 2.10 Å

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		1	.	.	.	.	.	.	.	.	10	.		.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		M	I	K	V	Y	G	V	P	G	W	G	.	S	T	I	S	E	L	M	L	T	L	A	D	I	P	Y	Q	F	V	D	V	S	G	F	D	H	E	G	A	S	R	E	L	L	K	T	L	N	P	L	C	Q	V	P	T	L	A	L	E	N	D	E	I	M	T	E	T	A	A	I	A	L	M	V	L	D	R	R	P
Query Conservation													.
Alig confidence													.																									.	.	.	.																				.
Template Conservation																																						.	.	.	.																				.
Template Sequence		V	X	T	L	F	S	N	K	D	D	I	Y	C	H	Q	V	K	I	V	L	A	E	K	G	V	L	Y	E	N	A	E	V	D	L	Q	A	.	.	.	.	L	P	E	D	L	X	E	L	N	P	Y	G	T	V	P	T	L	V	D	.	R	D	L	V	L	F	N	S	R	I	I	X	E	Y	L	D	E	R	F	P
Template Known Secondary structure									T	T															T										T	T	S	.	.	.	.										T	T			S						.	T	T					S												S
Template Predicted Secondary structure																																						.	.	.	.																				.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.					.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
			80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	D	L	A	P	P	V	G	R	A	E	R	Q	L	F	Q	R	L	L	V	W	L	V	A	N	V	Y	P	T	F	T	F	A	D	Y	P	E	R	W	A	P	D	A	P	E	Q	L	K	K	N	V	I	E	Y	R	K	S	L	Y	I	W	L	N	S	Q	L	T	A	E	P	Y	A	F	G	E	Q	L	T	L	V
Query Conservation		.
Alig confidence		.																																				.	.	.	.	.	.	.
Template Conservation																																						.	.	.	.	.	.	.
Template Sequence		H	P	P	L	X	Q	V	Y	P	V	S	R	A	K	D	R	L	L	X	L	R	I	E	Q	D	W	Y	P	T	L	A	K	A	E	N	G	.	.	.	.	.	.	.	T	E	K	E	K	T	S	A	L	K	Q	L	K	E	E	L	L	G	I	A	P	I	F	Q	Q	X	P	Y	F	X	N	E	E	F	G	L	V
Template Known Secondary structure		S	S			S		S	S																		T										S	.	.	.	.	.	.	.																			T							S	S	B	T	T	B	S	S
Template Predicted Secondary structure																																						.	.	.	.	.	.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120								.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.			.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.
Query SS confidence																	.	.
Query Sequence		D	C	Y	L	C	T	M	R	T	W	G	P	G	H	E	.	.	W	F	Q	D	N	A	T	N	I	S	A	I	A	D	A	V	C	Q	L	P	K	L	Q	E	V	L
Query Conservation																	.	.
Alig confidence																	.	.
Template Conservation
Template Sequence		D	C	Y	V	A	P	L	L	W	K	L	K	H	L	G	V	E	F	T	G	T	G	S	K	A	I	K	A	Y	X	E	R	V	F	T	R	D	S	F	L	Q	S	V
Template Known Secondary structure														T	T	T					S	T	T													T	S							T
Template Predicted Secondary structure
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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