Job Description P0AEL6 Confidence 15.05% Date Thu Jan 5 11:23:38 GMT 2012 Rank 56 Aligned Residues 235 % Identity 15% Template c1toaA_ PDB info PDB header:binding protein Chain: A: PDB Molecule:protein (periplasmic binding protein troa); PDBTitle: periplasmic zinc binding protein troa from treponema pallidum Resolution 1.80 Å

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		48	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.		.	.	.	.	120	.	.	.	.	.	.
Predicted Secondary structure																																																																						.
Query SS confidence																																																																						.
Query Sequence		R	I	V	S	T	S	V	T	L	T	G	S	L	L	A	I	D	A	P	V	I	A	S	G	A	T	T	P	N	N	R	V	A	D	D	Q	G	F	L	R	Q	W	S	K	V	A	K	E	R	K	L	Q	R	L	Y	I	G	E	P	S	A	E	A	V	A	A	Q	M	.	P	D	L	I	L	I	S	A	T	G	G
Query Conservation																																																																						.
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	V	V	T	T	I	G	M	I	A	D	A	V	K	N	I	A	Q	G	D	V	H	L	K	G	L	M	G	P	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	D	P	H	L	Y	T	A	T	A	G	D	V	E	W	L	G	N	A	D	L	I	L	Y	N	G	L	H	L
Template Known Secondary structure						S	S												G	G	G	S					S			T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T	T															S							T	T
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.																						.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.																							.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.										.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.
Query Sequence		D	S	A	L	A	L	Y	D	Q	L	S	T	I	A	P	T	L	I	I	N	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	D	K	S	W	Q	S	L	L	T	Q	L	G	E	I	T	G	H	.	.	.	.	.	.	.	.	.	E	K	Q	A	A	E	R	I	A	Q
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	T	K	M	G	E	V	F	S	K	L	R	G	S	R	L	V	V	A	V	S	E	T	I	P	V	S	Q	R	L	S	L	E	E	A	E	F	D	P	H	V	W	F	D	V	K	L	W	S	Y	S	V	K	A	V	Y	E	S	L	C	K	L	L	P	G	K	T	R	E	F	T	Q	R	Y	Q	A	Y	Q	Q	Q
Template Known Secondary structure		S	T	T									T	T	S	S					G	G	G	G	S		G	G	G	S		B	S	T	T	S		B				G	G	G	S																				G	G	G
Template Predicted Secondary structure
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	D	K	Q	L	A	A	A	K	E	Q	I	K	L	P	P	Q	P	V	T	A	I	V	Y	T	A	A	A	H	S	A	N	L	W	T	P	E	S	A	Q	G	Q	M	L	E	Q	L	G	F	T	L	A	K	L	P	A	G	L	N	A	S	Q	S	Q	G	K	R	H	D	I	I	Q	L	G	G	E	N	L	A	A
Query Conservation
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.
Template Sequence		L	D	K	L	D	A	Y	V	R	R	K	A	Q	S	L	P	A	E	R	R	V	L	V	T	A	.	.	.	.	.	.	.	.	.	.	.	H	D	A	F	G	Y	F	S	R	A	Y	G	F	E	V	K	.	.	.	.	G	L	Q	G	V	S	T	A	S	E	A	S	A	H	D	M	Q	E	L	A	A	F	I	A
Template Known Secondary structure															T	S		G	G	G							.	.	.	.	.	.	.	.	.	.	.		S										T					.	.	.	.					S	S		S	S
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.												.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.					.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		256	.	.	.	260	.	.	.	.	.	.	.		.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence		G	L	N	G	E	S	L	F	L	F	A	G	.	D	Q	K	D	A	D	A	I	Y	A	N	P	L	L	A	H	L	P	A	V	Q	N	K	Q	V	Y	A	L	G	T	E	T	F	R	L	D	Y	Y	S	A	M	Q	V	L	D	R	L	K	A	L	F
Query Conservation														.
Alig confidence														.
Template Conservation
Template Sequence		Q	R	K	L	P	A	I	F	I	E	S	S	I	P	H	K	N	V	E	A	L	R	D	A	V	Q	A	R	G	H	V	V	Q	I	G	G	E	L	F	S	D	A	M	G	D	A	G	T	S	E	G	T	Y	V	G	M	V	T	H	N	I	D	T	I
Template Known Secondary structure			T	T		S						T	T	S		T												T	T	T											S	S	S				T	T	S	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions