 |
Job Description | P19768 | Confidence | 64.06% | Date | Thu Jan 5 11:37:32 GMT 2012 |
Rank | 196 | Aligned Residues | 77 |
% Identity | 16% | Template | d1l8qa1 |
SCOP info | DNA/RNA-binding 3-helical bundle
| TrpR-like
| Chromosomal replication initiation factor DnaA C-terminal domain IV
|
Resolution | 2.70 |
|
 |
  |   |
30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | R | F | G | V | P | R | T | Q | V | R | T | W | V | A | L | Y | E | K | H | G | E | K | G | L | I | P | K | P | K | G | V | S | A | D | P | E | L | R | I | K | V | V | K | A | V | I | E | Q | H | M | S | L | N | Q | A | A | A | H | F | M | L | A | G | S | G | S | V | A | R | W | L | K | V | Y | E | E |
Query Conservation |   |
  |   |   |
|
|   |   |   |   |
|   |   |
|
|   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |
|
|   |
|
|
|   |   |
|
|   |   |   |   |   |   |   |   |
|   |   |   |   |
|   |   |   |
|
|
|   |   |   |   |
|   |   |
|   |
|   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |
|
|
|   |   |
|   |   |   |
|
|   |   |
|   |
|   |   |   |
|
|   |
|   |   |
|   |   |   |
|   |   |
|
|   |
|
|
|
|
|   |
|   |   |
|   |   |
|
|   |   |
|
|   |   |
|
|   |
|
|
|
|
|
|   |   |
|   |   |
|
|
|   |
Template Sequence |   |
R | K | E | R | D | K | L | X | Q | I | V | E | F | V | A | N | Y | Y | A | V | K | V | E | D | I | L | S | D | K | R | N | K | R | T | S | E | A | R | K | I | A | X | Y | L | C | R | K | V | C | S | A | S | L | I | E | I | A | R | A | F | K | R | K | D | H | T | T | V | I | H | A | I | R | S | V | E | E |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | S |
|
|  |  |  |  | S | S |
|
|
|
| S | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  | S | S |
|
|
| S | T |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
299 | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|