Job Description P19768 Confidence 98.96% Date Thu Jan 5 11:37:32 GMT 2012 Rank 4 Aligned Residues 100 % Identity 19% Template c6paxA_ PDB info PDB header:gene regulation/dna Chain: A: PDB Molecule:homeobox protein pax-6; PDBTitle: crystal structure of the human pax-6 paired domain-dna2 complex reveals a general model for pax protein-dna3 interactions Resolution 2.50 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.		.		.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																										.		.																					.
Query SS confidence																																																										.		.																					.
Query Sequence		S	K	P	K	Y	P	F	E	K	R	L	E	V	V	N	H	Y	F	T	T	D	D	G	Y	R	I	I	S	A	R	F	G	V	P	R	T	Q	V	R	T	W	V	A	L	Y	E	K	H	G	E	K	G	L	I	P	K	.	P	.	K	G	V	S	A	D	P	E	L	R	I	K	V	V	K	A	V	I	E	Q	.
Query Conservation																																																										.		.																					.
Alig confidence					.																	.																																				.		.																					.
Template Conservation					.																	.
Template Sequence		G	R	P	.	L	P	D	S	T	R	Q	R	I	V	E	L	A	H	S	G	.	A	R	P	C	D	I	S	R	I	L	Q	V	S	N	G	C	V	S	K	I	L	G	R	Y	Y	A	T	G	S	I	R	P	R	A	I	G	G	S	K	P	R	V	A	T	P	E	V	V	S	K	I	A	Q	Y	K	Q	E	C	P
Template Known Secondary structure		T	S		.															T	T	.											T																	S			S					S					S	S	S																T
Template Predicted Secondary structure					.																	.
Template SS confidence
		15	.	.		.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.		.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		79	80	.	.	.	.	.	.	.	.	.										90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.	.
Query Sequence		H	M	S	L	N	Q	A	A	A	H	F	.	.	.	.	.	.	.	.	.	M	L	A	G	S	G	S	V	A	R	W	L	K	V
Query Conservation													.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	I	F	A	W	E	I	R	D	R	L	L	S	E	G	V	C	T	N	D	N	I	P	S	V	S	S	I	N	R	V	L	R	N
Template Known Secondary structure		T													T	T	S	S		T	T	T
Template Predicted Secondary structure
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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