Job Description P19768 Confidence 68.34% Date Thu Jan 5 11:37:32 GMT 2012 Rank 179 Aligned Residues 90 % Identity 17% Template c3l1pA_ PDB info PDB header:transcription/dna Chain: A: PDB Molecule:pou domain, class 5, transcription factor 1; PDBTitle: pou protein:dna complex Resolution 2.80 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.							.	.	.	.	.	.																					40	.	.	.	.	.							.	.	.	.	50	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.
Query Sequence		Y	P	F	E	K	R	L	E	V	V	N	H	Y	F	T	T	D	D	G	Y	R	I	I	S	A	R	F	G	.	.	.	.	.	.	V	P	R	T	Q	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	T	W	V	A	L	.	.	.	.	.	.	Y	E	K	H	G	E	K	G
Query Conservation																														.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.
Alig confidence														.	.	.	.													.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.
Template Conservation														.	.	.	.
Template Sequence		F	A	K	L	L	K	Q	K	R	I	T	L	.	.	.	.	G	Y	T	Q	A	D	V	G	L	T	L	G	V	L	F	G	K	V	F	S	Q	T	T	I	S	R	F	E	A	L	Q	L	S	L	K	N	M	S	K	L	R	P	L	L	E	K	W	V	E	E	A	D	N	N	E	N	L	Q	E	I	S	K	S	V
Template Known Secondary structure													T	.	.	.	.	T															S													T	T		S																				T	T							S	S
Template Predicted Secondary structure														.	.	.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.					.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.					.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure																																	.	.	.	.
Query SS confidence																																	.	.	.	.
Query Sequence		L	I	P	K	P	K	G	V	S	A	D	P	E	L	R	I	K	V	V	K	A	V	I	E	Q	H	M	S	L	N	Q	.	.	.	.	A	A	A	H	F	M	L	A	G	S	G	S	V	A	R	W
Query Conservation																																	.	.	.	.
Alig confidence																																	.	.	.	.								.
Template Conservation																																												.
Template Sequence		Q	A	R	K	R	K	R	T	S	I	E	N	R	V	R	W	S	L	E	T	M	F	L	K	S	P	K	P	S	L	Q	Q	I	T	H	I	A	N	Q	L	G	L	.	E	K	D	V	V	R	V	W
Template Known Secondary structure				S																	T	T	T	T	T		S														T	T		.
Template Predicted Secondary structure																																												.
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.		.	.	.	.	.	.	.	140

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions