Job Description P19768 Confidence 29.80% Date Thu Jan 5 11:37:32 GMT 2012 Rank 389 Aligned Residues 95 % Identity 12% Template c3d1nK_ PDB info PDB header:transcription regulator/dna Chain: K: PDB Molecule:pou domain, class 6, transcription factor 1; PDBTitle: structure of human brn-5 transcription factor in complex2 with corticotrophin-releasing hormone gene promoter Resolution 2.51 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.							.	.	.	.	.	.	40	.																					.	.	.	.	.	.	.	.	50	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.
Query Sequence		Y	P	F	E	K	R	L	E	V	V	N	H	Y	F	T	T	D	D	G	Y	R	I	I	S	A	R	F	G	.	.	.	.	.	.	V	P	R	T	Q	V	R	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	V	A	L	Y	E	K	H	G	E	K	G	L	.	.	.	.	.
Query Conservation																														.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.
Alig confidence														.	.	.	.													.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.
Template Conservation														.	.	.	.
Template Sequence		F	A	K	N	F	K	I	R	R	L	S	L	.	.	.	.	G	L	T	Q	T	Q	V	G	Q	A	X	T	A	T	E	G	P	A	Y	S	Q	S	A	I	S	R	F	E	K	L	D	I	T	P	K	S	A	Q	K	L	K	P	V	L	E	K	W	L	N	E	A	E	L	R	N	Q	E	G	Q	Q	N	L	X	E
Template Known Secondary structure												T	T	.	.	.	.	T													S	S	S														T		S																						T	T	S	S	S
Template Predicted Secondary structure														.	.	.	.
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.					.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
									55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.					.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.																														.	.	.	.
Query SS confidence		.	.	.	.	.	.	.																														.	.	.	.
Query Sequence		.	.	.	.	.	.	.	I	P	K	P	K	G	V	S	A	D	P	E	L	R	I	K	V	V	K	A	V	I	E	Q	H	M	S	L	N	.	.	.	.	Q	A	A	A	H	F	M	L	A	G	S	G	S	V	A	R	W	L	K	V	Y	E
Query Conservation		.	.	.	.	.	.	.																														.	.	.	.
Alig confidence		.	.	.	.	.	.	.																														.	.	.	.									.
Template Conservation																																																		.
Template Sequence		F	V	G	G	E	P	S	K	K	R	K	R	R	T	S	F	T	P	Q	A	I	E	A	L	N	A	Y	F	E	K	N	P	L	P	T	G	Q	E	I	T	E	X	A	K	E	L	N	Y	.	D	R	E	V	V	R	V	W	F	S	N	R	R
Template Known Secondary structure					S	S																											S	S													T	T	S	.
Template Predicted Secondary structure																																																		.
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.		.	.	.	.	.	.	280	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions