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Job DescriptionP75831
Confidence100.00%DateThu Jan 5 12:14:48 GMT 2012
Rank15Aligned Residues230
% Identity27%Templatec3g5uB_
PDB info PDB header:membrane proteinChain: B: PDB Molecule:multidrug resistance protein 1a; PDBTitle: structure of p-glycoprotein reveals a molecular basis for2 poly-specific drug binding
Resolution3.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10.........20.........30.........40.........50.........60.........70.........80....
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Query Sequence  LELKDIRRSYPAGDEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKATSGTYRVAGQDVATLDADALAQLR
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Template Sequence  VQFSGVVFNYPT. RPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWL. . . .
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   1031........1040.. .......1050.........1060.........1070.........1080.........1090.........1100.....
 
   85....90.........100.........110.........120.........130.........140... ......150...
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Query Sequence  REHFGFIFQRYHLLSHLTAEQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRTEYYPA. . . . . . . . . . . QLSGGQQQRV
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Template Sequence  RAQLGIVSQEPILFDC. SIAENIAYGDNSRVVSYEE. . . . IVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRI
Template Known Secondary structure  TTS
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SSTTTGGG
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   1106...1110.........1120. ........1130.........1140 .........1150.........1160.........1170.........1180
 
   154.....160.........170.........180.........190.........200.........210.........220.........230...
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Query Sequence  SIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAIEKVNV
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Template Sequence  AIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR. EGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQ
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   1181........1190.........1200.........1210........ .1220.........1230.........1240.........1250.........
 
   234.....240.....
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Query Sequence  TGGTEPVVNTVS
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Template Sequence  KGIYFSMVSVQA
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   1260.........1270.
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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