Job Description P75831 Confidence 98.76% Date Thu Jan 5 12:14:48 GMT 2012 Rank 81 Aligned Residues 196 % Identity 28% Template c3auyB_ PDB info PDB header:recombination Chain: B: PDB Molecule:dna double-strand break repair rad50 atpase; PDBTitle: crystal structure of rad50 bound to adp Resolution 2.70 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.																			.	.	.	.	60	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	E	L	K	D	I	R	R	S	Y	P	A	G	D	E	Q	V	E	V	L	K	G	I	S	L	D	I	Y	A	G	E	M	V	A	I	V	G	A	S	G	S	G	K	S	T	L	M	N	I	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	L	D	K	A	T	S	G	T	Y	R
Query Conservation																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.													.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.													.
Template Sequence		I	R	M	N	N	F	K	.	.	.	.	.	.	.	.	.	.	.	S	H	V	N	S	R	I	K	F	E	K	G	.	I	V	A	I	I	G	E	N	G	S	G	K	S	S	I	F	E	A	V	F	F	A	L	F	G	A	G	S	F	N	Y	D	T	I	I	T	K	G	K	K	S	V	Y	V	E	L	D	F	E
Template Known Secondary structure								T	.	.	.	.	.	.	.	.	.	.	.	T										S		.								T	T	S	S															S					G	G	G	T	B		T	T		S
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.													.
Template SS confidence
		8	.	10	.	.	.	.												.	.	.	.	.	20	.	.	.	.	.	.		.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.																				.	.	.	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	A	G	Q	D	V	A	T	L	D	A	D	A	L	A	Q	L	R	R	E	H	F	G	F	I	F	Q	R	Y	H	L	L	S	H	L	T	A	E	Q	N	V	E	V	P	A	V	Y	A	G	L	E	R	K	Q	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	R	A	Q	E
Query Conservation																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.
Template Sequence		V	N	G	N	N	Y	K	I	I	R	E	Y	D	.	.	.	.	.	S	G	R	G	G	A	K	L	Y	K	N	G	K	P	Y	A	T	T	I	S	A	V	N	K	A	V	N	E	I	L	G	V	D	R	N	M	F	L	N	S	I	Y	I	K	Q	G	E	I	A	K	F	L	S	L	K	P	S	E	K	L	E	T
Template Known Secondary structure			T	T											.	.	.	.	.	T	T									T	T						S														S													T	T								S
Template Predicted Secondary structure															.	.	.	.	.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.						90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	L	Q	R	L	G	L	E	D	R	T	E	Y	Y	P	A	Q	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	A	K	L	L	G	I	D	E	F	E	K	C	Y	Q	K	M	G	E	I	V	K	E	Y	E	K	R	L	E	R	I	E	G	E	L	N	Y	N	L	E	K	E	K	E	K	L	T	K	F	V	E	Y	L	D	K	V	R	R	I	F	G	R	N	G	F	Q	A	Y	L	R	E	K	Y	V	P	L	I	Q	K	Y
Template Known Secondary structure							T																																	T	T																				T	T	T	T								T	T	T
Template Predicted Secondary structure
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
																																							146	.	.	.	150	.	.	.	.	.	.	.	.	.	160								.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	G	G	Q	Q	Q	R	V	S	I	A	R	A	L	M	.	.	.	.	.	.	.	N	G	G	Q	V	I	L	A	D	E	P	T	G	A	L	D	S	H	S	G	E
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	N	E	A	F	S	E	F	D	L	P	Y	S	F	V	E	L	T	K	D	F	E	V	R	V	H	A	P	N	G	V	L	T	I	D	N	L	S	G	G	E	Q	I	A	V	A	L	S	L	R	L	A	I	A	N	A	L	I	G	N	R	V	E	C	I	I	L	D	E	P	T	V	Y	L	D	E	N	R	R	A
Template Known Secondary structure									T	T		S		S						T	T	T							T	T					G	G	G	S																						S	S			S						S	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		879	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	V	M	A	I	L	H	Q	L	R	D	R	G	H	T	V	I	I	V	T	H	D	P	Q	V	A	A	Q	A	E	R	V	I	E	I	R	D
Query Conservation
Alig confidence														.
Template Conservation														.
Template Sequence		K	L	A	E	I	F	R	K	V	K	S	I	.	P	Q	M	I	I	I	T	H	H	R	E	L	E	D	V	A	D	V	I	I	N	V	K	K
Template Known Secondary structure												S	S	.	S							S		G	G	G	G	G	G		S
Template Predicted Secondary structure														.
Template SS confidence
		959	960	.	.	.	.	.	.	.	.	.	970		.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions