Job Description P75831 Confidence 98.37% Date Thu Jan 5 12:14:48 GMT 2012 Rank 86 Aligned Residues 131 % Identity 25% Template c2o8bA_ PDB info PDB header:dna binding protein/dna Chain: A: PDB Molecule:dna mismatch repair protein msh2; PDBTitle: human mutsalpha (msh2/msh6) bound to adp and a g t mispair Resolution 2.75 Å

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		2	.	.	.	.	.	.	.	10	.										.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.										.	.	.	.	.	60	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.	.	.
Query Sequence		T	P	L	L	E	L	K	D	I	R	.	.	.	.	.	.	.	.	.	R	S	Y	P	A	G	D	E	Q	V	E	V	L	K	G	I	S	L	D	I	Y	A	G	E	M	V	A	I	V	G	A	S	G	S	G	K	S	T	L	M	N	I	L	.	.	.	.	.	.	.	.	.	G	C	L	D	K	A	T	S	G
Query Conservation												.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.				.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.
Template Sequence		Q	G	R	I	I	L	K	A	S	R	H	A	C	V	E	V	Q	D	E	I	A	F	.	.	.	.	.	.	.	.	I	P	N	D	V	Y	F	E	K	D	K	Q	M	F	H	I	I	T	G	P	N	M	G	G	K	S	T	Y	I	R	Q	T	G	V	I	V	L	M	A	Q	I	G	C	F	V	P	C	E	S	A
Template Known Secondary structure			S										T	T	T	T	T	S	T	T				.	.	.	.	.	.	.	.									T	T	S	S								S	T	T	S	S																	T	T			B	S	S	S
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.
Template SS confidence
		629	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650									.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Y	R	V	A	G	Q	D	V	A	T	L	D	A	D	A	L	A	Q	L	R	R	E	H	F	G	F	I	F	Q	R	Y	H	L	L	S	H	L	T	A	E	Q	N	V	E	V	P	A	V	Y	A	G	L	E	R	K	Q	R	L	L	R	A	Q	E	L	L	Q	R	L	G	L	E	D	R	T	E	Y	Y	P	A
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	V	S	I	V	D	C	I	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	R	V	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							S					.	.	.	.	.	.	.	.	.	.	.	.	.				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		701	.	.	.	.	.	.	.	.	710														.	.	.
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160			.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.		.	.	.	.	190	.	.	.		.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.																										.									.
Query SS confidence																			.	.																										.									.
Query Sequence		Q	L	S	G	G	Q	Q	Q	R	V	S	I	A	R	A	L	M	.	.	N	G	G	Q	V	I	L	A	D	E	P	T	G	A	L	D	S	H	S	G	E	E	V	M	A	.	I	L	H	Q	L	R	D	R	.	G	H	T	V	I	I	V	T	H	D	P	Q	V	A	A	Q
Query Conservation																			.	.																										.									.
Alig confidence		.	.																.	.																										.									.
Template Conservation		.	.
Template Sequence		.	.	S	T	F	M	A	E	M	L	E	T	A	S	I	L	R	S	A	T	K	D	S	L	I	I	I	D	E	L	G	R	G	T	S	T	Y	D	G	F	G	L	A	W	A	I	S	E	Y	I	A	T	K	I	G	A	F	C	M	F	A	T	H	F	H	E	L	T	A	L
Template Known Secondary structure		.	.															T	T			T	T	S						S				S	S																			T	T											T	T	S	T	T
Template Predicted Secondary structure		.	.
Template SS confidence
				723	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions