Job Description P75831 Confidence 96.66% Date Thu Jan 5 12:14:48 GMT 2012 Rank 154 Aligned Residues 127 % Identity 16% Template c2j37W_ PDB info PDB header:ribosome Chain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs Resolution 8.00 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	D	I	Y	A	G	E	M	V	A	I	V	G	A	S	G	S	G	K	S	T	L	M	N	I	L	G	C	L	D	K	A	T	S	G	T	Y	R	V	A	G	Q	D	V	A	T	L	D	A	D	A	L	A	Q	L	R	R	E	H	F	G	F	I	F	Q	R	Y	H	L	L	S	H	L	T	A	E	Q	N	V
Query Conservation
Alig confidence																																		.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.
Template Conservation																																		.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.
Template Sequence		A	W	T	P	T	K	G	N	V	I	M	F	V	G	L	Q	G	S	G	K	T	T	T	C	S	K	L	A	Y	Y	Y	Q	.	R	K	G	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	T	C	L	I	C	A	D	T	F	R	A	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							S	S								S	T	T	S	S														.		T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										S	S	S	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																		.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.		.	.	.	.																							.	130	.	.	.	.	.	.	.	.	.	140
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.		.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure																																																																			.
Query SS confidence																																																																			.
Query Sequence		E	V	P	A	V	Y	A	G	L	E	R	K	Q	R	L	L	R	A	Q	E	L	L	Q	R	L	G	L	E	D	R	T	E	Y	Y	P	A	Q	L	S	G	G	Q	Q	Q	R	V	S	I	A	R	A	L	M	N	G	G	Q	V	I	L	A	D	E	P	T	.	G	A	L	D	S	H	S	G	E	E	V	M	A	I
Query Conservation																																																																			.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																										.	.																											.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.																										.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	G	A	F	D	Q	L	K	Q	N	A	T	K	A	R	I	P	F	Y	G	S	Y	T	E	M	D	.	.	P	V	I	I	A	S	E	G	V	E	K	F	K	N	E	N	F	E	I	I	I	V	D	T	S	G	R	H	K	Q	E	D	S	L	F	E	E	M	L	Q	V
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.														T										S		.	.															T	T													T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																										.	.
Template SS confidence
														143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.			.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	H	Q	L	R	D	R	G	H	T	V	I	I	V	T
Query Conservation
Alig confidence					.
Template Conservation					.
Template Sequence		A	N	A	.	I	Q	P	D	N	I	V	Y	V	M	D
Template Known Secondary structure					.				S
Template Predicted Secondary structure					.
Template SS confidence
		209	210	.		.	.	.	.	.	.	.	.	220	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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