Job Description P27296 Confidence 100.00% Date Thu Jan 5 11:43:42 GMT 2012 Rank 1 Aligned Residues 579 % Identity 16% Template c2vsfA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:dna repair helicase rad3 related protein; PDBTitle: structure of xpd from thermoplasma acidophilum Resolution 2.9 Å

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		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	I	E	A	P	T	G	V	G	K	T	L	S	Y	L	I	P	G	I	A	I	A	R	E	E	Q	K	T	L	V	V	S	T	A	N	V	A	L	Q	D	Q	I	Y	S	K	D	L	P	L	L	K	K	I	I	P	D	L	K	F	T	A	A	F	G	R	G	R	Y	V	C	P	R	N	L	T	A	L	A	S
Query Conservation
Alig confidence																																														.											.
Template Conservation																																														.											.
Template Sequence		V	A	L	E	S	P	T	G	S	G	K	T	I	M	A	L	K	S	A	L	Q	Y	S	S	E	R	K	L	K	V	L	Y	L	V	R	T	N	S	Q	E	E	Q	V	I	.	K	E	L	R	S	L	S	S	T	M	.	K	I	R	A	I	P	M	Q	G	R	V	N	M	C	I	L	Y	R	M	V	D	D	L	H
Template Known Secondary structure								S	S	S	S	T	T						T	T		S	S	T	T	T	T	S								S	S									.								T	T	S	.															S	T								S
Template Predicted Secondary structure																																														.											.
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.		.	70	.	.	.	.	.	.	.	.		.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	E	P	T	Q	Q	D	L	L	A	F	L	D	D	E	L	T	P	N	N	Q	E	E	Q	K	R	C	A	K	L	K	G	D	L	D	T	Y	K	W	D	G	L	R	D	H	T	D	I	A	I	D	D	D	L	W	R	R	L	S	T	D	K	A	S	C	L	N	R	N	C	Y	Y	Y	R	E	C	P	F	F	V
Query Conservation
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	I	N	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	S	L	A	K	F	C	N	M	K	K	R	E	V	M	A	G	N	E	A	A	C	P	Y	F	N	F	K	I	R	S	D	E	T	K	R	F	L	F	D	E	L	P	T	A	E	E	F	Y	D	Y	G	E	R	N	N	V	C	P	Y	E	S
Template Known Secondary structure		S				.	.	.	.	.	.	.	.	.	.	.	.	.	.																	T		G	G	G	S	T	T		S	G	G	G	G											T															T
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		103	.	.	.															.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.					.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.
Query SS confidence																												.	.	.	.
Query Sequence		A	R	R	E	I	Q	E	A	E	V	V	V	A	N	H	A	L	V	M	A	A	M	E	S	E	A	.	.	.	.	V	L	P	D	P	K	N	L	L	L	V	L	D	E	G	H	H	L	P	D	V	A	R	D	A	L	E	M	S	A	E	I	T	A	P	W	Y	R	L	Q	L	D	L	F	T	K	L	V	A	T
Query Conservation																												.	.	.	.
Alig confidence																												.	.	.	.																																						.	.	.	.	.	.
Template Conservation																																																																					.	.	.	.	.	.
Template Sequence		M	K	A	A	L	P	D	A	D	I	V	I	A	P	Y	A	Y	F	L	N	R	S	V	A	E	K	F	L	S	H	W	G	V	S	R	N	Q	I	V	I	I	L	D	E	A	H	N	L	P	D	I	G	R	S	I	G	S	F	R	I	S	V	E	S	L	N	R	.	.	.	.	.	.	A	D	R	E	A	Q	A
Template Known Secondary structure						G	G	G		S										T	S															S	T	T						T	T	G	G	G																					.	.	.	.	.	.
Template Predicted Secondary structure																																																																					.	.	.	.	.	.
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.							.	.	.	.	240	.	.
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	M	E	Q	F	R	P	K	T	I	P	P	L	A	I	P	E	R	L	N	A	H	C	E	E	L	Y	E	L	I	A	S	L	N	N	I	L	N	L	Y	M	P	A	G	Q	E	A	E	H	R	F	A	M	G	E	L	P	D	E	V	L	E	I	C	Q	R	L	A	K	L	T	E	M	L	R	G	L	A	E	L
Query Conservation
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	G	D	P	E	L	S	Q	K	I	H	V	S	D	L	I	E	M	I	R	S	A	L	Q	S	M	V	S	.	.	.	.	.	.	.	.	.	.	.	.	.	E	R	C	G	K	G	D	V	R	I	R	F	Q	E	F	M	E	Y	M	R	I	M	N	K	R	S	E	R	E	I	R	S	L	L	N	Y	L	Y	L
Template Known Secondary structure		T	T			B	S	S	S	S		B																		.	.	.	.	.	.	.	.	.	.	.	.	.				S	S	S																		T
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270														.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	L	N	D	L	S	E	K	T	G	S	H	D	I	V	R	L	H	R	L	I	L	Q	M	N	R	A	L	G	M	F	E	A	Q	S	K	L	W	R	L	A	S	L	A	Q	S	S	G	A	P	V	T	K	W	A	T	R	E	E	R	E	G	Q	L	H	L	W	F	H	C	V	G	I	R	V	S	D	Q	L	E
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	F	G	E	Y	V	E	N	E	K	E	K	V	G	K	V	P	F	S	Y	C	S	S	V	A	S	R	I	I	A	F	S	D	Q	D	E	E	K	Y	A	A	I	L	S	P	E	D	G	G	Y	.	.	.	.	.	M	Q	A	A	C	L	D	P	S	G	I	L	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.													T	S																		S	S		T	T	T								S	T	T			.	.	.	.	.								T					G
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.	.	.	.
Template SS confidence
															310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.						.	360	.	.	.	.	.	.	.	.	.	370	.
		446	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	L	W	R	S	I	P	H	I	I	V	T	S	A	T	L	R	S	L	N	S	F	S	R	L	Q	E	M	S	G	L	K	E	K	A	G	D	R	F	V	A	L	D	S	P	F	N	H	C	E	Q	G	K	I	V	I	P	R	M	R	V	E	P	S	I	D	N	E	E	Q	H	I	A	E	M	A	A	F	F
Query Conservation
Alig confidence						.	.	.													.	.	.												.	.	.	.																.
Template Conservation						.	.	.													.	.	.												.	.	.	.																.
Template Sequence		V	L	K	E	.	.	.	S	K	T	I	H	M	S	G	T	L	D	P	.	.	.	F	D	F	Y	S	D	I	T	G	F	E	.	.	.	.	I	P	F	K	K	I	G	E	I	F	P	P	E	N	R	.	Y	I	A	Y	Y	D	G	V	S	S	K	Y	D	T	L	D	E	K	E	L	D	R	M	A	T	V	I
Template Known Secondary structure		G	G	G	G	.	.	.	S							S				S	.	.	.									T			.	.	.	.							S					G	G	G		.						S	S	S			S	S	S	S
Template Predicted Secondary structure						.	.	.													.	.	.												.	.	.	.																.
Template SS confidence
		372	.	.	.				.	.	.	.	380	.	.	.	.	.	.	.				.	.	390	.	.	.	.	.	.	.	.					.	400	.	.	.	.	.	.	.	.	.	410	.	.	.		.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440
		526	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	K	Q	V	E	S	K	K	H	L	G	M	L	V	L	F	A	S	G	R	A	M	Q	R	F	L	D	Y	V	T	D	L	R	L	M	L	L	V	Q	G	D	Q	P	R	Y	R	L	V	E	L	H	R	K	R	V	A	N	G	E	R	S	V	L	V	G	L	Q	S	F	A	E	G	L	D	L	K	G	D	L	L
Query Conservation
Alig confidence						.																										.	.	.																										.								.	.	.
Template Conservation						.																										.	.	.																										.								.	.	.
Template Sequence		E	D	I	I	.	L	K	V	K	K	N	T	I	V	Y	F	P	S	Y	S	L	M	D	R	V	E	N	R	V	S	.	.	.	F	E	H	M	K	E	Y	R	G	I	D	Q	K	E	L	Y	S	M	L	K	K	F	R	R	D	.	H	G	T	I	F	A	V	.	.	.	S	G	G	R	L	S	E	G	N	E	L
Template Known Secondary structure						.					S							S	S													.	.	.	S							T	T																S	.								.	.	.	T	T	S	G	G	G
Template Predicted Secondary structure						.																										.	.	.																										.								.	.	.
Template SS confidence
		441	.	.	.		.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.				470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.		.	.	.	.	.	500	.				.	.	.	.	.	.	.	.	510	.	.
		606	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Q	V	H	I	H	K	I	A	F	P	P	I	D	S	P	V	V	I	T	E	G	E	W	L	K	S	L	N	R	Y	P	F	E	V	Q	S	L	P	S	A	S	F	N	L	I	Q	Q	V	G	R	L	I	R	S	H	G	C	W	G	E	V	V	I	Y	D	K	R	L	L	T	K	N	Y	G	K	R	L	L	D
Query Conservation
Alig confidence															.																																																										.	.	.	.	.	.
Template Conservation															.																																																										.	.	.	.	.	.
Template Sequence		E	M	I	I	L	A	G	L	P	F	P	R	P	.	D	A	I	N	R	S	L	F	D	Y	Y	E	R	K	Y	G	K	G	W	E	Y	S	V	V	Y	P	T	A	I	K	I	R	Q	E	I	G	R	L	I	R	S	A	E	D	T	G	A	C	V	I	L	D	K	R	A	G	Q	.	.	.	.	.	.	F	R	K
Template Known Secondary structure							S	S						S	.														T	T	S							T																		S	S	S										T	T		G	G	.	.	.	.	.	.	G	G	T
Template Predicted Secondary structure															.																																																										.	.	.	.	.	.
Template SS confidence
		518	.	520	.	.	.	.	.	.	.	.	.	530		.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.							.	.	590
		686	.	.	.	690	.	.	.	.	.				.	.	.	.	700	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.
Query SS confidence												.	.	.
Query Sequence		A	L	P	V	F	P	I	E	Q	P	.	.	.	E	V	P	E	G	I	V	K	K	K	E	K
Query Conservation												.	.	.
Alig confidence												.	.	.
Template Conservation
Template Sequence		F	I	P	D	M	K	K	T	S	D	P	A	S	D	I	Y	N	F	F	I	S	A	Q	A	R
Template Known Secondary structure		T	S	T	T					S	S
Template Predicted Secondary structure
Template SS confidence
		591	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.