Job Description P27296 Confidence 91.04% Date Thu Jan 5 11:43:42 GMT 2012 Rank 261 Aligned Residues 81 % Identity 19% Template c2j37W_ PDB info PDB header:ribosome Chain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs Resolution 8.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.												.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	A	L	T	A	A	L	K	A	Q	I	A	A	W	Y	K	A	L	Q	E	Q	I	P	D	F	I	P	R	A	P	Q	R	Q	M	I	A	D	V	A	K	T	L	.	.	.	.	.	.	.	.	.	.	.	A	G	E	E	G	R	H	L	A	I	E	A	P	T	G	V	G	K	T	L	S	Y	L	I	P	G	I
Query Conservation																																												.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.								.	.																.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.								.	.
Template Sequence		I	K	L	V	K	Q	L	R	E	N	V	K	S	A	I	D	.	.	L	E	E	M	A	S	G	.	.	L	N	K	R	K	M	I	Q	H	A	V	F	K	E	L	V	K	L	V	D	P	G	V	K	A	W	T	P	T	K	G	N	V	I	M	F	V	G	L	Q	G	S	G	K	T	T	T	C	S	K	L	A	Y
Template Known Secondary structure		S	S	T	T												T	.	.	T					S	S	.	.	S																													S	S								S	T	T	S	S
Template Predicted Secondary structure																		.	.								.	.
Template SS confidence
		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.			.	.	.	.	.	.	.			.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	A	R	E	E	Q	K	T	L	V	V	S	T	A	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	Y	Q	R	K	G	W	K	T	C	L	I	C	A	D	T
Template Known Secondary structure						T	T
Template Predicted Secondary structure
Template SS confidence
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions