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Job DescriptionP27296
Confidence99.62%DateThu Jan 5 11:43:42 GMT 2012
Rank28Aligned Residues337
% Identity17%Templatec1xtkA_
PDB info PDB header:gene regulationChain: A: PDB Molecule:probable atp-dependent rna helicase p47; PDBTitle: structure of decd to dead mutation of human uap56
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   12.......20...... ...30.........40.........50.........60.........70....... ..80........
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Query Sequence  AAWYKALQEQIPDFI. PRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQK. . TLVVSTANVAL
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Template Sequence  PELLRAIVDC. . GFEHPSEVQHECIPQAI. . . . . . LGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTREL
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   54.....60... ......70.........80 .........90.........100.........110.........120.....
 
   8990.........100.........110.........120.........130.........140.........150.........160........
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Query Sequence  QDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKW
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Template Sequence  AFQIS. KEYERFSKYMPNVKVAVFFGGLSI. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  .TTT
TT


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   126...130 .........140.........150....
 
   169170.........180.........190.........200.........210.........220.........230.........240........
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Query Sequence  DGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLD
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . KKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILD
Template Known Secondary structure  ......................................S

S
TTSS

TT

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   155....160.........170.........180.........190......
 
   249250.........260.........270.........280.........290.........300.........310.........320........
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Query Sequence  EGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPA
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Template Sequence  EADKMLEQLDMRRDV. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  SSS.................................................................
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   197..200.........210.
 
   329330.........340.........350.........360.........370.........380.........390.........400........
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Query Sequence  GQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASL
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   409410.........420.........430.........440.........450.........460.........470.........480........
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Query Sequence  AQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVAL
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . QEIFRMTPHEKQVMMFSATLSKE. . . IRPVCRKFMQDPMEIFVDDE
Template Known Secondary structure  ..................................TS
SSSSS

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   212.......220.........230.... .....240.........250....
 
   489490.........500.........510.........520.........530.........540.........550.........560........
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Query Sequence  DSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDLRLMLLVQGDQP
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Template Sequence  TKLTLHGLQQYYVKLKDN. . . . . . . . . . . . . EKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGM
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TT


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SSS
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   255....260.........270.. .......280.........290.........300.........310.........320.
 
   569570.........580.........590.........600.........610.........620.........630.........640........
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Query Sequence  RYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASF
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Template Sequence  PQEERLSRYQQFKDFQRRILVATNLFGRGMDIE. . RVNIAFNYDMPEDSD. . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 
TT

SS
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TT
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T..TSS

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   322.......330.........340.........350.... .....360.........
 
   649650.........660.........670..
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Query Sequence  NLIQQVGRLIRSHGCWGEVVIYDK
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Template Sequence  TYLHRVARAGRFGTKGLAITFVSD
Template Known Secondary structure  S
B
SSS




S
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   370.........380.........390...
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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