Job Description P27296 Confidence 90.24% Date Thu Jan 5 11:43:42 GMT 2012 Rank 276 Aligned Residues 78 % Identity 15% Template c1qzwC_ PDB info PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication Resolution 4.10 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.														.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	K	A	Q	I	A	A	W	Y	K	A	L	Q	E	Q	I	P	D	F	I	P	R	A	P	Q	R	Q	M	I	A	D	V	A	K	T	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	G	E	E	G	R	H	L	A	I	E	A	P	T	G	V	G	K	T	L	S	Y	L	I	P	G	I	A	I	A	R
Query Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.
Template Sequence		V	F	S	L	T	A	K	I	K	E	R	L	N	K	E	K	P	.	P	S	V	L	E	R	K	E	W	F	I	S	I	V	Y	D	E	L	S	K	L	F	G	G	D	K	E	P	N	V	N	P	T	K	L	P	F	I	I	M	L	V	G	V	Q	G	S	G	K	T	T	T	A	G	K	L	A	Y	F	Y	K	K
Template Known Secondary structure														T	T				.		S	S	S																		T	T		S						S		S	S	S	S								S	S	S	S	S	S	T	T	T										T
Template Predicted Secondary structure																			.
Template SS confidence
		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
		74	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	E	Q	K	T	L	V	V	S	T	A	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	G	Y	K	V	G	L	V	A	A	D	V
Template Known Secondary structure		T	S					B
Template Predicted Secondary structure
Template SS confidence
		123	.	.	.	.	.	.	130	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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