Job Description P22731 Confidence 100.00% Date Thu Jan 5 11:39:07 GMT 2012 Rank 59 Aligned Residues 214 % Identity 24% Template c2vf7B_ PDB info PDB header:dna-binding protein Chain: B: PDB Molecule:excinuclease abc, subunit a.; PDBTitle: crystal structure of uvra2 from deinococcus radiodurans Resolution 2.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.						50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure																																									.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	S	A	H	Y	G	K	I	Q	A	L	H	E	V	S	L	H	I	N	Q	G	E	I	V	T	L	I	G	A	N	G	A	G	K	T	T	L	L	G	.	.	.	.	.	T	L	C	G	D	P	R	A	T	S	G	R	I	V	F	D	D	K	D	I	T	D	W	Q	T	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																									.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																									.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	E	L	N	G	V	T	R	N	N	L	D	N	L	D	V	R	F	P	L	G	V	M	T	S	V	T	G	V	S	G	S	G	K	S	T	L	V	S	Q	A	L	V	D	A	L	A	A	H	F	G	Q	G	S	A	R	L	G	G	D	L	A	Q	I	T	R	L	V	R	V	D	Q	K	P	I	G	R	T	P	R
Template Known Secondary structure										T	T											S	S							S	T	T	S	S						T	T										S									S	S	G	G	G									S	S		S		S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		503	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.
																																																																					75	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	K	I	M	R	E	A	V	A	I	V	P	E
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	N	M	A	T	Y	T	G	L	F	D	Q	V	R	K	L	F	A	A	T	P	L	A	K	K	R	G	Y	N	A	G	R	F	S	F	N	V	K	G	G	R	C	E	H	C	Q	G	E	G	W	V	M	V	P	S	V	Y	A	P	C	P	V	C	H	G	T	R	Y	N	A	E	T	L	E	V	E	Y	R	G	K
Template Known Secondary structure									T	T								T	T	S	S	T					S				T	T	S	S		S	S	S	S	S	S	B		S	S	S	T	T														T	T	T	S	S	S		B		T	T	G	G	G			S	S	S
Template Predicted Secondary structure
Template SS confidence
		600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.				.	.	160	.	.	.	.
Predicted Secondary structure																																																																								.	.	.
Query SS confidence																																																																								.	.	.
Query Sequence		G	R	R	V	F	S	R	M	T	V	E	E	N	L	A	M	G	G	F	F	A	E	R	D	Q	F	Q	E	R	I	K	W	V	Y	E	L	F	P	R	L	H	E	R	R	I	Q	R	A	G	T	M	S	G	G	E	Q	Q	M	L	A	I	G	R	A	L	M	S	N	P	R	.	.	.	L	L	L	L	D	E	P
Query Conservation																																																																								.	.	.
Alig confidence																	.	.	.	.																																																				.	.	.
Template Conservation																	.	.	.	.
Template Sequence		N	I	A	D	V	L	A	L	T	V	D	E	A	H	D	.	.	.	.	F	F	A	D	E	S	A	I	F	R	A	L	D	T	L	R	E	V	G	L	G	Y	L	R	L	G	Q	P	A	T	E	L	S	G	G	E	A	Q	R	I	K	L	A	T	E	L	R	R	S	G	R	G	G	T	V	Y	V	L	D	E	P
Template Known Secondary structure								T		B							.	.	.	.		T	T	T															T		T	T	S	B	T	T			G	G	G			S															S	S	S	S									S
Template Predicted Secondary structure																	.	.	.	.
Template SS confidence
		685	.	.	.	.	690	.	.	.	.	.	.	.	.	.					700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210							.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.
Query Sequence		S	L	G	L	A	P	I	I	I	Q	Q	I	F	D	T	I	E	Q	L	R	E	Q	G	M	T	I	F	L	V	E	Q	N	A	N	Q	A	L	K	L	A	D	R	G	Y	V	L	.	.	.	.	.	.	E	N	G	H	V	V	L	S	D	T	G	D	A	L	L	A	N	E	A
Query Conservation																																																.	.	.	.	.	.
Alig confidence																																						.										.	.	.	.	.	.
Template Conservation																																						.
Template Sequence		T	T	G	L	H	P	A	D	V	E	R	L	Q	R	Q	L	V	K	L	V	D	A	G	N	T	V	I	A	V	E	H	K	M	Q	V	V	.	A	A	S	D	W	V	L	D	I	G	P	G	A	G	E	D	G	G	R	L	V	A	Q	G	T	P	A	E	V	A	Q	A	A	G
Template Known Secondary structure			S	S																			T	T														.	T	T		S							S	S	S	G	G	G			S						S						T		S	S
Template Predicted Secondary structure																																						.
Template SS confidence
		761	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.		.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions