Return to main results Retrieve Phyre Job Id

Job DescriptionP22731
Confidence100.00%DateThu Jan 5 11:39:07 GMT 2012
Rank11Aligned Residues220
% Identity31%Templatec1z47B_
PDB info PDB header:ligand binding proteinChain: B: PDB Molecule:putative abc-transporter atp-binding protein; PDBTitle: structure of the atpase subunit cysa of the putative2 sulfate atp-binding cassette (abc) transporter from3 alicyclobacillus acidocaldarius
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6...10..... ....20.........30.........40.........50.........60.........70.........80....
Predicted Secondary structure  .































Query SS confidence 









.




































































Query Sequence  LSFDKVSAHY. GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDDKDITDWQTAKIMREAVAI
Query Conservation 
    
   
.     
  


 
  

   


 








  
 
      
 
   
  
            
  
Alig confidence 









.




























































...




Template Conservation 
 
  

  
 
   

  


 
  

   


 








  
 

  
  
 
   
  
       ...     
Template Sequence  IEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQK. . . RNVGL
Template Known Secondary structure 

TTSTT

TT

STTSSTSS

STT
TT

GGG...SS
Template Predicted Secondary structure 
































...

Template SS confidence 















































































   15....20.........30.........40.........50.........60.........70.........80...... ...90.
 
   85....90.........100....... ..110.........120.........130.........140.........150.........160..
Predicted Secondary structure 














..



















Query SS confidence 






















. .






















































Query Sequence  VPEGRRVFSRMTVEENLAMGGFF. . AERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSNPRLLLLD
Query Conservation 
 
   
    

 
 
      ..                
             

 
  


 

 

   
 




Alig confidence 






















..
















.




































Template Conservation             

 


                     
   .            



  


 




   
 




Template Sequence  VFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFM. RLESYANRFPHELSGGQQQRVALARALAPRPQVLLFD
Template Known Secondary structure  TT



TTS
TTGGGTT

T.T
GGGTTS
GGGS
TT

S
Template Predicted Secondary structure 















.


















Template SS confidence 















































































   92.......100.........110.........120.........130... ......140.........150.........160.........170
 
   163......170.........180... ......190.........200.........210.........220.........
Predicted Secondary structure 






.














Query SS confidence 




















.













































Query Sequence  EPSLGLAPIIIQQIFDTIEQL. REQGMTIFLVEQNANQALKLADRGYVLENGHVVLSDTGDALLANEA
Query Conservation 


  

      
   
  
.   
 


  

         
 
  
  
 

  
   

     
Alig confidence 




















.













































Template Conservation 

 
 

      
   
  
    
 


 



  
    



 

  
 

  
   

   
 
Template Sequence  EPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPG
Template Known Secondary structure  STTTTS


S

STT
S
S
Template Predicted Secondary structure 



















Template SS confidence 



































































   171........180.........190.........200.........210.........220.........230........
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions