Job Description P39208 Confidence 99.19% Date Thu Jan 5 11:58:30 GMT 2012 Rank 107 Aligned Residues 152 % Identity 11% Template c3ld9D_ PDB info PDB header:transferase Chain: D: PDB Molecule:thymidylate kinase; PDBTitle: crystal structure of thymidylate kinase from ehrlichia chaffeensis at2 2.15a resolution Resolution 2.15 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.						.	30	.	.	.										.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.						.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.						.	.	.	.	.	.	.	.	.
Query Sequence		G	E	S	F	I	L	M	G	V	S	G	S	G	K	T	L	I	G	S	K	V	A	A	L	L	S	.	.	.	.	.	A	K	F	I	D	.	.	.	.	.	.	.	.	.	G	D	D	L	H	P	A	K	N	I	D	K	M	S	Q	G	I	P	L	S	D	E	D	R	L	P	W	L	E	R	L	N	D	A	S
Query Conservation																												.	.	.	.	.						.	.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.						.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	M	F	I	T	F	E	G	I	D	G	S	G	K	T	T	Q	S	H	L	L	A	E	Y	L	S	E	I	Y	G	V	N	N	V	V	L	T	R	E	P	G	G	T	L	L	N	E	S	V	R	N	L	L	F	K	A	Q	G	L	D	S	L	S	E	L	L	F	F	I	A	M	R	R	E	H	F	V	K	I	I
Template Known Secondary structure										S	T	T	S	S																		G	G	G						S	S		S	S													S																							T
Template Predicted Secondary structure
Template SS confidence
		0	.	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.																.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	S	L	Y	K	K	N	E	T	G	F	I	V	C	S	S	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	K	Q	Y	R	D	I	L	R	K	G	S	P	H	V	H	F	L	W	L	D	G	D	Y	E	T	I	L	A	R	M	Q	R	R	A	G	H	F	M	P	V	A	L	L	K	S	Q	F
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	P	S	L	M	Q	K	K	I	V	I	C	D	R	F	I	D	S	T	I	A	Y	Q	G	Y	G	Q	G	I	D	C	S	L	I	D	Q	L	N	D	L	V	I	D	V	Y	P	D	I	T	F	I	I	D	V	D	D	M	E	F	Y	Y	R	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R
Template Known Secondary structure							T	T							S										T	T	T	T																S				S																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.																	.
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	L	E	R	P	Q	A	D	E	Q	D	I	V	R	I	D	I	N	H	D	I	A	N	V	T	E	Q	C	R	Q	A	V	L	A	I	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	G	F	Y	D	I	A	K	K	N	P	H	R	C	H	V	I	T	T	Y	D	I	D	D	I	N	F	V	H	L	E	V	I	K	V	L	Q
Template Known Secondary structure												T	T	T								S	S															T
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions