Job Description P39208 Confidence 99.65% Date Thu Jan 5 11:58:30 GMT 2012 Rank 51 Aligned Residues 173 % Identity 10% Template c2w0sB_ PDB info PDB header:transferase Chain: B: PDB Molecule:thymidylate kinase; PDBTitle: crystal structure of vaccinia virus thymidylate kinase2 bound to brivudin-5'-monophosphate Resolution 2.92 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.											.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.
Query Sequence		A	G	E	S	F	I	L	M	G	V	S	G	S	G	K	T	L	I	G	S	K	V	A	A	L	L	S	A	K	F	I	D	G	.	.	.	.	.	.	.	.	.	.	D	D	L	H	P	A	K	N	I	D	K	M	S	Q	G	I	P	L	S	D	E	D	R	L	P	W	L	E	R	L	N	D	A	S	Y	S	L
Query Conservation																																			.	.	.	.	.	.	.	.	.	.
Alig confidence																																			.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	G	A	L	I	V	F	E	G	L	D	K	S	G	K	T	T	Q	C	M	N	I	M	E	S	I	P	A	N	T	I	K	Y	L	N	F	P	Q	R	S	T	V	T	G	K	M	I	D	D	Y	L	T	R	K	K	T	Y	N	D	H	I	V	N	L	L	F	C	A	N	R	W	E	F	A	S	F	I	Q	E	Q
Template Known Secondary structure											S	T	T	S													S		T	T	S						S	S		T	T	S											T	T	S																		T	T
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		72	.	.	.	.	.	.	.	80	.	.	.	.													.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	K	K	N	E	T	G	F	I	V	C	S	S	.	.	.	.	.	.	.	.	.	.	.	.	L	K	K	Q	Y	R	D	I	L	R	K	G	S	P	H	V	H	F	L	W	L	D	G	D	Y	E	T	I	L	A	R	M	Q	R	R	A	G	H	F	M	P	V	A	L	L	K	S	Q	F	E	A	L	E	R	P
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.																																				.	.
Template Conservation																																																														.	.
Template Sequence		L	E	Q	G	I	T	L	I	V	D	R	Y	A	F	S	G	V	A	Y	A	A	A	K	G	A	S	M	T	L	S	K	S	Y	E	S	G	L	P	K	P	D	L	V	I	F	L	E	S	G	S	K	E	I	N	R	N	V	G	E	E	.	.	I	Y	E	D	V	T	F	Q	Q	K	V	L	Q	E	Y	K	K	M
Template Known Secondary structure				T	T							S												T	T											T	T	S				S													T	T		B		S	S	.	.	T	T		B
Template Predicted Secondary structure																																																														.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.			.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		140	.	.	.	.	.		.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		Q	A	D	E	Q	D	.	I	V	R	I	D	I	N	H	D	I	A	N	V	T	E	Q	C	R	Q	A	V	L	A	I	R	Q	N	R	I	C	A
Query Conservation								.
Alig confidence								.
Template Conservation
Template Sequence		I	E	E	G	D	I	H	W	Q	I	I	S	S	E	F	E	E	D	V	K	K	E	L	I	K	N	I	V	I	E	A	I	H	T	V	T	G	P
Template Known Secondary structure				T		S	S							T	T	S																			S			S	S
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions