Job Description P39208 Confidence 97.63% Date Thu Jan 5 11:58:30 GMT 2012 Rank 297 Aligned Residues 93 % Identity 16% Template c2iy3A_ PDB info PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome Resolution 16.00 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.						.	.	30	.	.	.	.	.	.	.	.	.	40	.							.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																										.	.	.	.	.															.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.															.	.	.	.	.	.
Query Sequence		E	S	F	I	L	M	G	V	S	G	S	G	K	T	L	I	G	S	K	V	A	A	L	L	.	.	.	.	.	S	A	K	F	I	D	G	D	D	L	H	P	A	K	.	.	.	.	.	.	N	I	D	K	M	S	Q	G	I	P	L	S	D	E	D	R	L	P	W	L	E	R	L	N	D	A	S	Y	S	L	Y
Query Conservation																										.	.	.	.	.															.	.	.	.	.	.
Alig confidence																										.	.	.	.	.															.	.	.	.	.	.
Template Conservation
Template Sequence		N	L	W	F	L	V	G	L	Q	G	S	G	K	T	T	T	A	A	K	L	A	L	Y	Y	K	G	K	G	R	R	P	L	L	V	A	A	D	T	Q	R	P	A	A	R	E	Q	L	R	L	L	G	E	K	V	G	V	P	V	L	E	V	M	D	G	E	S	P	E	S	I	R	R	R	V	E	E	K	A	R	L
Template Known Secondary structure										T	T	S	S															T	T										S	S																T								T	T
Template Predicted Secondary structure
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	K	N	E	T	G	F	I	V	C	S	S	L	K	K	Q	Y	R	D	I	L	R	K	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	A	R	D	L	I	L	V	D	T	A	G	R	L	Q	I	D	E	P	L	M	G	E	L
Template Known Secondary structure			T		S										S	S
Template Predicted Secondary structure
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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