Job Description P39208 Confidence 99.44% Date Thu Jan 5 11:58:30 GMT 2012 Rank 94 Aligned Residues 139 % Identity 14% Template c1yj5B_ PDB info PDB header:transferase Chain: B: PDB Molecule:5' polynucleotide kinase-3' phosphatase catalytic domain; PDBTitle: molecular architecture of mammalian polynucleotide kinase, a dna2 repair enzyme Resolution 2.80 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	S	F	I	L	M	G	V	S	G	S	G	K	T	L	I	G	S	K	V	A	A	L	L	S	A	K	F	I	D	G	D	D	L	H	P	A	K	N	I	D	K	M	S	Q	G	I	P	L	S	D	E	D	R	L	P	W	L	E	R	L	N	D	A	S	Y	S	L	Y	K	K	N	E	T	G	F	I	V	C	S
Query Conservation
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	V	V	V	A	V	G	F	P	G	A	G	K	S	T	F	I	Q	E	H	L	V	S	A	G	Y	V	H	V	N	R	D	T	L	G	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	Q	R	C	V	S	S	C	Q	A	A	L	R	Q	G	K	R	V	V	I	D	N	T
Template Known Secondary structure										T	T	S	S									T	G	G	G	T											S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														T	T							S
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400																						.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.					.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120						.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.			.	.	.	.	.	150
Predicted Secondary structure																	.	.	.	.																							.	.	.	.	.																									.	.							.	.
Query SS confidence																	.	.	.	.																							.	.	.	.	.																									.	.							.	.
Query Sequence		S	L	K	K	Q	Y	R	D	I	L	R	K	G	S	P	.	.	.	.	H	V	H	F	L	W	L	D	G	D	Y	E	T	I	L	A	R	M	Q	R	R	A	.	.	.	.	.	G	H	F	M	P	V	A	L	L	K	S	Q	F	E	A	L	E	R	P	Q	A	D	E	Q	.	.	D	I	V	R	I	D	.	.
Query Conservation																	.	.	.	.																							.	.	.	.	.																									.	.							.	.
Alig confidence																	.	.	.	.																							.	.	.	.	.																									.	.							.	.
Template Conservation
Template Sequence		N	P	D	V	P	S	R	A	R	Y	I	Q	C	A	K	D	A	G	V	P	C	R	C	F	N	F	C	A	T	I	E	Q	A	R	H	N	N	R	F	R	E	X	T	D	P	S	H	A	P	V	S	D	X	V	X	F	S	Y	R	K	Q	F	E	P	P	T	L	A	E	G	F	L	E	I	L	E	I	P	F	R
Template Known Secondary structure				S															T																											T	T																					G	G	G	S		S
Template Predicted Secondary structure
Template SS confidence
		424	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	N	H	D	I	A	N	V	T	E	Q	C	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	Q	E	H	L	D	P	A	L	Q	R	L	Y
Template Known Secondary structure				T	T
Template Predicted Secondary structure
Template SS confidence
		504	.	.	.	.	.	510	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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