Return to main results Retrieve Phyre Job Id

Job DescriptionP0A7S3
Confidence100.00%DateThu Jan 5 11:06:07 GMT 2012
Rank2Aligned Residues123
% Identity72%Templated1i94l_
SCOP infoOB-fold Nucleic acid-binding proteins Cold shock DNA-binding domain-like
Resolution3.20

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60.........70.........80.
Predicted Secondary structure 
















































Query SS confidence 















































































Query Sequence  ATVNQLVRKPRARKVAKSNVPALEACPQKRGVCTRVYTTTPKKPNSALRKVCRVRLTNGFEVTSYIGGEGHNLQEHSVIL
Query Conservation   




 
  
  
  
     
   

 




 
    






 

 








 
 













 

Alig confidence 















































































Template Conservation 





 
  
     
 
   
   

 




 
    






 

 








 
 













 

Template Sequence  PTINQLVRKGREKVRKKSKVPALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYEVTAYIPGEGHNLQEHSVVL
Template Known Secondary structure 

SS








S


SSS
S







SS

S
B

TTS


B

SS




SS
Template Predicted Secondary structure 
















































Template SS confidence 















































































   5....10.........20.........30.........40.........50.........60.........70.........80....
 
   82.......90.........100.........110.........120....
Predicted Secondary structure 





























Query SS confidence 










































Query Sequence  IRGGRVKDLPGVRYHTVRGALDCSGVKDRKQARSKYGVKRPKA
Query Conservation 




  







 


  
   
  

  




 



 
Alig confidence 










































Template Conservation 




  











  
  

  
   




 



 
Template Sequence  IRGGRVKDLPGVRYHIVRGVYDAAGVKDRKKSRSKYGTKKPKE
Template Known Secondary structure 




SS
TT


BSSBTTB


TT

SSTTTT





T
Template Predicted Secondary structure 






























Template SS confidence 










































   85....90.........100.........110.........120.......
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions