Job Description P0A7S3 Confidence 100.00% Date Thu Jan 5 11:06:07 GMT 2012 Rank 6 Aligned Residues 103 % Identity 27% Template c2zkql_ PDB info PDB header:ribosomal protein/rna Chain: L: PDB Molecule: PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Resolution 8.70 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.		.	.	60	.	.	.	.	.	.	.	.	.	70	.			.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																																																	.															.	.												.	.	.	.	.
Query SS confidence																																																	.															.	.												.	.	.	.	.
Query Sequence		P	R	A	R	K	V	A	K	S	N	V	P	A	L	E	A	C	P	Q	K	R	G	V	C	T	R	V	Y	T	T	T	P	K	K	P	N	S	A	L	R	K	V	C	R	V	R	L	.	T	N	G	F	E	V	T	S	Y	I	G	G	E	G	.	.	H	N	L	Q	E	H	S	V	I	L	I	.	.	.	.	.
Query Conservation																																																	.															.	.												.	.	.	.	.
Alig confidence																																																	.															.	.												.	.	.	.	.
Template Conservation
Template Sequence		K	K	A	H	L	G	T	A	L	K	A	N	P	F	G	G	A	S	H	A	K	G	I	V	L	E	K	V	G	V	E	A	K	Q	P	N	S	A	I	R	K	C	V	R	V	Q	L	I	K	N	G	K	K	I	T	A	F	V	P	N	D	G	C	L	N	F	I	E	E	N	D	E	V	L	V	A	G	F	G	R
Template Known Secondary structure			S												S	T	T		S																T	T													S	G	G	G									S	S		S	S					T	T							S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.			100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure																			.	.
Query SS confidence																			.	.
Query Sequence		R	G	G	R	V	K	D	L	P	G	V	R	Y	H	T	V	R	.	.	G	A	L	D	C	S	G	V	K	D	R	K	Q	A
Query Conservation																			.	.
Alig confidence																			.	.
Template Conservation
Template Sequence		K	G	H	A	V	G	D	I	P	G	V	R	F	K	V	V	K	V	A	N	V	S	L	L	A	L	Y	K	G	K	K	E	R
Template Known Secondary structure		S	S			B	T	T	B	T	T							T	T	S	T	T	S		S	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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