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Job DescriptionP37313
Confidence96.75%DateThu Jan 5 11:55:10 GMT 2012
Rank252Aligned Residues112
% Identity21%Templatec3cf1C_
PDB info PDB header:transport proteinChain: C: PDB Molecule:transitional endoplasmic reticulum atpase; PDBTitle: structure of p97/vcp in complex with adp/adp.alfx
Resolution4.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   42.......50.........60.........70.........80.........90.........100.........110.........120.
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Query Sequence  SFNLERGKTLAVVGESGCGKSTLGRLLTMIEMPTGGELYYQGQDLLKHDPQAQKLRRQKIQIVFQNPYGSLNPRKKVGQI
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Template Sequence  KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN. . FISIKGPELLTMWFGESEAN. . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TS




S


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   505....510.........520.........530........ .540.........550........
 
   122.......130.........140.........150.........160.........170.........180.........190
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Query Sequence  LEEPLLINTSLSKEQRREKALSMMAKVGLKTEHYDRYPHMFSGGQRQRIAIARGLMLDPDVVIADEPVS. . . . . . . . . . .
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . VREIFDKARQAAPCVLFFDELDSIAKARGGNIGD
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S
SSGGGGTTTT
S
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   559560.........570.........580.........590..
 
   191........200.........210.........220.....
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Query Sequence  . . ALDVSVRAQVLNLMMDLQQELGLSYVFISHDLSVV
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Template Sequence  GGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII
Template Known Secondary structure  S

S

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GGG
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   593......600.........610.........620.........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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