Job Description P37313 Confidence 100.00% Date Thu Jan 5 11:55:10 GMT 2012 Rank 1 Aligned Residues 238 % Identity 35% Template c2yyzA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:sugar abc transporter, atp-binding protein; PDBTitle: crystal structure of sugar abc transporter, atp-binding protein Resolution 2.11 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	L	Q	A	I	D	L	K	K	H	Y	P	V	K	K	G	M	F	A	P	E	R	L	V	K	A	L	D	G	V	S	F	N	L	E	R	G	K	T	L	A	V	V	G	E	S	G	C	G	K	S	T	L	G	R	L	L	T	M	I	E	M	P	T	G	G	E	L	Y	Y	Q	G	Q	D	L	L	K	H	D
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.
Template Sequence		P	S	I	R	V	V	N	L	K	K	Y	F	.	.	.	.	.	.	.	.	.	.	G	K	V	K	A	V	D	G	V	S	F	E	V	K	D	G	E	F	V	A	L	L	G	P	S	G	C	G	K	T	T	T	L	L	M	L	A	G	I	Y	K	P	T	S	G	E	I	Y	F	D	D	V	L	V	N	D	I	P
Template Known Secondary structure														.	.	.	.	.	.	.	.	.	.	T	T													T	T								S	T	T	S	S										T	S	S			S							T	T				T	T	S
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.											.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure
Query SS confidence
Query Sequence		P	Q	A	Q	K	L	R	R	Q	K	I	Q	I	V	F	Q	N	P	Y	G	S	L	N	P	R	K	K	V	G	Q	I	L	E	E	P	L	L	I	N	T	S	L	S	K	E	Q	R	R	E	K	A	L	S	M	M	A	K	V	G	L	K	T	E	H	Y	D	R	Y	P	H	M	F	S	G	G	Q	R	Q	R	I
Query Conservation
Alig confidence							.	.	.	.	.									.	.																			.																						.
Template Conservation							.	.	.	.	.									.	.																			.																						.
Template Sequence		P	K	Y	R	E	.	.	.	.	.	V	G	M	V	F	Q	N	Y	.	.	A	L	Y	P	H	M	T	V	F	E	N	I	A	F	P	L	R	A	.	R	R	I	S	K	D	E	V	E	K	R	V	V	E	I	A	R	K	L	L	I	.	D	N	L	L	D	R	K	P	T	Q	L	S	G	G	Q	Q	Q	R	V
Template Known Secondary structure		G	G	G	T	T	.	.	.	.	.						S	S		.	.				T	T	S								G	G	G	S	S	.	S		S					T	T										T	T		.	G	G	G	T	T	S		G	G	G	S
Template Predicted Secondary structure							.	.	.	.	.									.	.																			.																						.
Template SS confidence
		72	.	.	.	.						.	.	.	80	.	.	.	.			.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.		.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.		.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	A	R	G	L	M	L	D	P	D	V	V	I	A	D	E	P	V	S	A	L	D	V	S	V	R	A	Q	V	L	N	L	M	M	D	L	Q	Q	E	L	G	L	S	Y	V	F	I	S	H	D	L	S	V	V	E	H	I	A	D	E	V	M	V	M	Y	L	G	R	C	V	E	K	G	T	K	D	Q	I	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	L	A	R	A	L	V	K	Q	P	K	V	L	L	F	D	E	P	L	S	N	L	D	A	N	L	R	M	I	M	R	A	E	I	K	H	L	Q	Q	E	L	G	I	T	S	V	Y	V	T	H	D	Q	A	E	A	M	T	M	A	S	R	I	A	V	F	N	Q	G	K	L	V	Q	Y	G	T	P	D	E	V	Y
Template Known Secondary structure								T	T			S						S	T	T	T	T	S																												S										S							T	T
Template Predicted Secondary structure
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	N	P	R	H	P	Y	T	Q	A	L	L	S	A	T	P	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	S	P	K	N	M	F	V	A	S	F	I	G	N	P	P	T
Template Known Secondary structure			S		S	B							S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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