Job Description P37313 Confidence 99.72% Date Thu Jan 5 11:55:10 GMT 2012 Rank 68 Aligned Residues 204 % Identity 18% Template c2o5vA_ PDB info PDB header:replication/recombination Chain: A: PDB Molecule:dna replication and repair protein recf; PDBTitle: recombination mediator recf Resolution 1.61 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Q	A	I	D	L	K	K	H	Y	P	V	K	K	G	M	F	A	P	E	R	L	V	K	A	L	D	G	V	S	F	N	L	E	R	G	K	T	L	A	V	V	G	E	S	G	C	G	K	S	T	L	G	R	L	L	T	M	I	E	M	P	T	G	G	E	L	Y	Y	Q	G	Q	D	L	L	K	H	D	P	Q
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.
Template Sequence		L	S	T	L	N	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	N	L	A	P	G	T	L	N	F	P	E	G	.	V	T	G	I	Y	G	E	N	G	A	G	K	T	N	L	L	E	A	A	Y	L	A	L	T	G	Q	T	D	A	P	R	I	E	Q	L	I	Q	A	G	E	T	E	A
Template Known Secondary structure						S	B	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T			S							S		.								T	T	S	S														S					S	S	G	G	G	G	B		T	T		S
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.
Template SS confidence
		9	10	.	.	.	.																		.	.	.	.	.	20	.	.	.	.	.	.	.		.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	Q	K	L	R	R	Q	K	I	Q	I	V	F	Q	N	P	Y	G	S	L	N	P	R	K	K	V	G	Q	I	L	E	E	P	L	L	I	N	T	S	L	S	K	E	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.
Template Sequence		Y	.	.	.	.	.	.	.	V	R	A	D	L	Q	Q	G	G	S	L	S	I	Q	E	V	G	L	G	R	G	R	R	Q	L	K	V	D	G	V	R	A	R	T	G	D	L	P	R	G	G	A	V	W	I	R	P	E	D	S	E	L	V	F	G	P	P	S	G	R	R	A	Y	L	D	S	L	L	S	R	L	S
Template Known Secondary structure			.	.	.	.	.	.	.								T	T											T	T							T	T					G	G	G			S								T	T	T	T					S
Template Predicted Secondary structure			.	.	.	.	.	.	.
Template SS confidence
		71								.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	R	Y	G	E	Q	L	S	R	Y	E	R	T	V	S	Q	R	N	A	A	L	R	G	G	E	E	W	A	M	H	V	W	D	D	V	L	L	K	L	G	T	E	I	M	L	F	R	R	R	A	L	T	R	L	D	E	L	A	R	E	A	N	A	Q	L	G	S	R	K	T	L	A	L	T	L	T	E	S	T	S
Template Known Secondary structure																								T	T		G	G	G	T	T	T	T																																	T	T			S									S	S
Template Predicted Secondary structure
Template SS confidence
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
																			137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.										.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	R	E	K	A	L	S	M	M	A	K	V	G	L	K	T	E	H	Y	D	R	Y	P	H	M	F	S	G	G	Q	R	Q	R	I	A	I	A	R	G	L	M	L	.	.	.	.	.	.	.	.	.	D	P	D	V	V	I	A	D	E	P	V	S
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	E	T	Y	A	A	D	L	R	G	R	R	A	E	E	L	A	R	G	S	T	V	T	G	P	H	R	D	D	L	L	L	T	L	G	D	F	P	A	S	D	Y	A	S	R	G	E	G	R	T	V	A	L	A	L	R	R	A	E	L	E	L	L	R	E	K	F	G	E	D	P	V	L	L	L	D	D	F	T	A
Template Known Secondary structure		T	T	T								T								T	S				S	G	G	G								T	T																																S	S									G	G	G
Template Predicted Secondary structure
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.						.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure																																								.	.	.	.	.
Query SS confidence																																								.	.	.	.	.
Query Sequence		A	L	D	V	S	V	R	A	Q	V	L	N	L	M	M	D	L	Q	Q	E	L	G	L	S	Y	V	F	I	S	H	D	L	S	V	V	E	H	I	.	.	.	.	.	A	D	E	V	M	V	M	Y	L	G	R	C	V	E	K	G	T	K
Query Conservation																																								.	.	.	.	.
Alig confidence																		.	.	.	.	.																		.	.	.	.	.
Template Conservation																		.	.	.	.	.
Template Sequence		E	L	D	P	H	R	R	Q	Y	L	L	D	L	A	A	S	.	.	.	.	.	V	P	Q	A	I	V	T	G	T	E	L	A	P	G	A	A	L	T	L	R	A	Q	A	G	R	F	T	P	V	A	D	E	E	M	Q	A	E	G	T	A
Template Known Secondary structure																		.	.	.	.	.	S	S							S	S			T	T		S							T	T								T	T	T	S		T	T
Template Predicted Secondary structure																		.	.	.	.	.
Template SS confidence
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.						320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions