Job Description P37313 Confidence 98.16% Date Thu Jan 5 11:55:10 GMT 2012 Rank 97 Aligned Residues 137 % Identity 14% Template c1ewqA_ PDB info PDB header:replication/dna Chain: A: PDB Molecule:dna mismatch repair protein muts; PDBTitle: crystal structure taq muts complexed with a heteroduplex2 dna at 2.2 a resolution Resolution 2.20 Å

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		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.										70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.	.
Query Sequence		D	G	V	S	F	N	L	E	R	G	K	T	L	A	V	V	G	E	S	G	C	G	K	S	T	L	G	R	L	L	T	.	.	.	.	.	.	.	.	.	M	I	E	M	P	T	G	G	E	L	Y	Y	Q	G	Q	D	L	L	K	H	D	P	Q	A	Q	K	L	R	R	Q	K	I	Q	I	V	F	Q	N	P	Y
Query Conservation																																	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.																							.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	D	L	E	X	A	.	.	.	H	E	L	V	L	I	T	G	P	N	X	A	G	K	S	T	F	L	R	Q	T	A	L	I	A	L	L	A	Q	V	G	S	F	V	P	A	E	E	A	H	L	P	L	F	D	G	I	Y	T	R	I	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							S	.	.	.	S							S		S	S	S	S																T	T	T			B	S	S	S								S									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure								.	.	.																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		570	.	.	.	.	.				.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	S	L	N	P	R	K	K	V	G	Q	I	L	E	E	P	L	L	I	N	T	S	L	S	K	E	Q	R	R	E	K	A	L	S	M	M	A	K	V	G	L	K	T	E	H	Y	D	R	Y	P	H	M	F	S	G	G	Q	R	Q	R	I	A	I	A	R	G	L	M	L	D	P	D	V	V	I	A	D	E	P	V
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	K	S	T	F	X	V	E	X	E	.	.	.	.	.	E	V	A	L	I	L	K	E	A	T	E	N	S	L	V	L	L	D	E	V	G
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S								.	.	.	.	.											T	T							S	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.
Template SS confidence
																																														635	.	.	.	.	640	.	.	.	.						.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	L	D	V	S	V	R	A	Q	V	L	N	L	M	M	D	L	Q	Q	E	L	G	L	S	Y	V	F	I	S	H	D	L	S	V	V	E	H	I	A	D	E	V	M	V	M	Y	L	G	R	C	V	E	K	G	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	G	T	S	S	L	D	G	V	A	I	A	T	A	V	A	E	A	L	H	E	R	R	A	Y	T	L	F	A	T	H	Y	F	E	L	T	A	L	G	L	P	R	L	K	N	L	H	V	A	A	R	E	E	A	G	G
Template Known Secondary structure		T	T	S																				T														T				T	T												S	S	S
Template Predicted Secondary structure
Template SS confidence
		666	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions