Job Description P0A917 Confidence 3.75% Date Thu Jan 5 11:09:11 GMT 2012 Rank 71 Aligned Residues 144 % Identity 11% Template c3jtyB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:benf-like porin; PDBTitle: crystal structure of a benf-like porin from pseudomonas fluorescens2 pf-5 Resolution 2.58 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.					.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.														.	80	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	S	T	V	T	G	G	Y	A	Q	S	D	A	Q	G	Q	M	N	K	.	.	.	.	M	G	G	F	N	L	K	Y	R	Y	E	E	D	N	S	P	L	G	V	I	G	S	F	T	Y	T	E	K	S	R	T	A	S	S	G	.	.	.	.	.	.	.	.	.	.	.	.	.	D	Y	N	K	N	Q	Y	Y	G
Query Conservation																					.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	L	G	A	N	L	G	F	F	Y	G	K	E	D	G	S	A	R	A	G	D	M	E	N	R	T	W	S	G	L	F	S	A	K	Y	G	G	N	T	F	Y	V	G	L	Q	K	L	T	G	D	S	A	W	M	R	V	N	G	T	S	G	G	T	L	A	N	D	S	Y	N	A	S	Y	D	N	A	K	E	K	S
Template Known Secondary structure																T	T		T	T																	T	T													S	S					B	T	T				T	T	S	T	T			S	S					S	T	T
Template Predicted Secondary structure
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.					.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.			.	.	160	.
Predicted Secondary structure																																																								.	.	.	.																	.	.
Query SS confidence																																																								.	.	.	.																	.	.
Query Sequence		I	T	A	G	P	A	Y	R	I	N	D	W	A	S	I	Y	G	V	V	G	V	G	Y	G	K	F	Q	T	T	E	Y	P	T	Y	K	H	D	T	S	D	Y	G	F	S	Y	G	A	G	L	Q	F	N	P	M	.	.	.	.	E	N	V	A	L	D	F	S	Y	E	Q	S	R	I	R	S	.	.	V	D	V	G
Query Conservation																																																								.	.	.	.																	.	.
Alig confidence																																				.	.	.																		.	.	.	.																	.	.
Template Conservation																																				.	.	.
Template Sequence		W	Q	V	R	H	D	Y	N	F	A	A	L	G	V	P	G	L	T	L	M	N	R	Y	I	S	G	S	N	V	H	T	A	T	V	.	.	.	S	D	G	K	E	W	G	R	E	S	E	V	A	Y	T	V	Q	S	G	T	L	K	N	L	N	L	K	W	R	N	S	T	M	R	R	D	F	S	N	N	E	F	D
Template Known Secondary structure										T	T	T	T	T		T	T																T	T		.	.	.																		S	S	S	S	T	T													S	S		S
Template Predicted Secondary structure																																				.	.	.
Template SS confidence
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.				.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	W	I	A	G	V	G	Y	R	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	N	R	L	I	I	S	Y	P	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		408	.	410	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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