Job Description P0A917 Confidence 94.54% Date Thu Jan 5 11:09:11 GMT 2012 Rank 36 Aligned Residues 144 % Identity 19% Template c3dzmB_ PDB info PDB header:unknown function Chain: B: PDB Molecule:hypothetical conserved protein; PDBTitle: crystal structure of a major outer membrane protein from thermus2 thermophilus hb27 Resolution 2.80 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.				.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure																																.	.	.
Query SS confidence																																.	.	.
Query Sequence		T	V	T	G	G	Y	A	Q	S	D	A	Q	G	Q	M	N	K	M	G	G	F	N	L	K	Y	R	Y	E	E	D	.	.	.	N	S	P	L	G	V	I	G	S	F	T	Y	T	E	K	S	R	T	A	S	S	G	D	Y	N	K	N	Q	Y	Y	G	I	T	A	G	P	A	Y	R	I	N	D	W	A	S	I	Y
Query Conservation																																.	.	.
Alig confidence																																.	.	.																																						.
Template Conservation																																																																								.
Template Sequence		G	F	G	G	Q	L	A	V	V	A	E	D	L	A	P	G	L	P	L	G	V	R	L	G	V	G	F	A	T	S	D	A	L	D	D	G	Y	D	L	G	G	G	T	T	W	G	D	V	K	E	A	G	K	F	S	E	W	G	Q	N	V	T	L	S	L	D	V	L	Y	K	.	P	L	P	V	E	V	A	P	Y
Template Known Secondary structure		S													S	S	S																	B		T	T		B		S	S	S		B									T																		.				S
Template Predicted Secondary structure																																																																								.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.		.	.	.	.	.	90	.	.	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.							.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.			.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																.	.	.	.	.	.																														.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.																														.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	V	V	G	V	G	Y	G	K	F	Q	T	T	E	.	.	.	.	.	.	Y	P	T	Y	K	H	D	T	S	D	Y	G	F	S	Y	G	A	G	L	Q	F	N	P	M	E	N	V	A	L	.	.	D	F	S	Y	E	Q	S	R	I	R	S	V	D	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																.	.	.	.	.	.																														.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.																														.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	G	V	R	Y	N	F	F	S	G	G	Y	T	D	P	E	D	N	L	T	I	K	A	Q	T	I	S	S	N	Q	L	G	L	G	L	G	V	R	A	A	Y	P	L	M	P	N	L	S	L	V	G	D	L	G	V	D	Y	Y	F	Q	A	C	F	T	R	V	E	E	D	D	S	G	N	K	S	Q	S	S	V	C
Template Known Secondary structure																	S	S	S	S	S	S																								T	T																								T	T
Template Predicted Secondary structure
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
																					161	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T	W	I	A	G	V	G	Y	R	F
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	G	D	S	G	Y	E	D	V	N	K	F	V	T	Q	P	E	W	V	L	K	L	R	L	G	A	A	Y	R	F
Template Known Secondary structure		T	T	S	T	T								B				S
Template Predicted Secondary structure
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions