Job Description P0A917 Confidence 7.75% Date Thu Jan 5 11:09:11 GMT 2012 Rank 63 Aligned Residues 142 % Identity 9% Template c2y0kA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:pyroglutatmate porin opdo; PDBTitle: crystal structure of pseudomonas aeruginosa opdo Resolution 2.30 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.															.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	V	T	G	G	Y	A	Q	S	D	A	Q	G	Q	M	N	K	M	G	G	F	N	L	K	Y	R	Y	E	E	D	N	S	P	L	G	V	I	G	S	F	T	Y	T	E	K	S	R	T	A	S	S	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	Y	N	K	N	Q	Y	Y	G	I	T	A	G	P
Query Conservation																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	S	D	L	R	F	A	R	A	S	E	D	G	G	F	R	E	L	D	N	R	A	F	G	A	L	F	S	L	R	L	G	A	H	A	V	A	A	G	Y	Q	R	I	S	G	D	D	P	Y	P	Y	I	A	G	S	D	P	Y	L	V	N	F	I	Q	I	G	D	F	G	N	V	D	E	R	S	W	Q	L	R	Y
Template Known Secondary structure														T	T	S																	T	T												S	S	S					B	T	T	S					T	T			S	S					S	T	T
Template Predicted Secondary structure
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.					.	.	.	.	.	.	.	.	150	.	.	.	.	.	.		.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.																.
Query SS confidence																																																			.	.	.	.																.
Query Sequence		A	Y	R	I	N	D	W	A	S	I	Y	G	V	V	G	V	G	Y	G	K	F	Q	T	T	E	Y	P	T	Y	K	H	D	T	S	D	Y	G	F	S	Y	G	A	G	L	Q	F	N	P	M	.	.	.	.	E	N	V	A	L	D	F	S	Y	E	Q	S	R	I	R	.	S	V	D	V	G	T	W	I	A	G	V
Query Conservation																																																			.	.	.	.																.
Alig confidence																											.	.	.																						.	.	.	.																.
Template Conservation																											.	.	.
Template Sequence		D	Y	D	F	G	A	L	G	L	P	G	L	S	F	M	S	R	Y	V	S	G	D	N	V	A	.	.	.	R	G	A	A	N	D	G	K	E	W	E	R	N	T	D	L	G	Y	V	V	Q	S	G	P	L	K	N	L	G	V	K	W	R	N	A	T	V	R	S	N	F	A	N	D	L	D	E	N	R	L	I	L
Template Known Secondary structure						T	T	T	T		T	T															.	.	.		T	T																			S	S	T	T	T	T													S	S	S
Template Predicted Secondary structure																											.	.	.
Template SS confidence
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.				.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
		168	.	170	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Y	R	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	Y	S	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		378	.	380	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions