Job Description P0A917 Confidence 7.13% Date Thu Jan 5 11:09:11 GMT 2012 Rank 64 Aligned Residues 131 % Identity 11% Template c2odjA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:porin d; PDBTitle: crystal structure of the outer membrane protein oprd from pseudomonas2 aeruginosa Resolution 2.90 Å

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		24	.	.	.	.	.	30	.	.	.				.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure												.	.	.
Query SS confidence												.	.	.
Query Sequence		A	T	S	T	V	T	G	G	Y	A	.	.	.	Q	S	D	A	Q	G	Q	M	N	K	M	G	G	F	N	L	K	Y	R	Y	E	E	D	N	S	P	L	G	V	I	G	S	F	T	Y	T	E	K	S	R	T	A	S	S	G	D	Y	N	K	N	Q	Y	Y	G	I	T	A	G	P	A	Y	R	I	N	D	W	A
Query Conservation												.	.	.
Alig confidence												.	.	.																										.														.	.	.	.	.	.	.	.	.	.
Template Conservation																																								.														.	.	.	.	.	.	.	.	.	.
Template Sequence		E	G	L	D	L	E	A	G	H	F	T	E	E	L	Y	A	T	Y	A	G	E	T	A	K	S	A	D	F	I	G	G	R	Y	A	I	T	D	N	.	L	S	A	S	L	Y	G	A	E	L	E	D	I	.	.	.	.	.	.	.	.	.	.	Y	R	Q	Y	Y	L	N	S	N	Y	T	I	P	L	A	S	D	Q
Template Known Secondary structure		T	T															T	T	T					S											S	S	S	S	.											T	T	T	.	.	.	.	.	.	.	.	.	.																T	T
Template Predicted Secondary structure																																								.														.	.	.	.	.	.	.	.	.	.
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.		.	.	.	.	190	.	.	.	.	.	.	.	.											.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	I	Y	G	V	V	G	V	G	Y	G	K	F	Q	T	T	E	Y	P	T	Y	K	H	D	T	S	D	Y	G	F	S	Y	G	A	G	L	Q	F	N	P	M	E	N	V	A	L	D	F	S	Y	E	Q	S	R	I	R	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.									.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.									.
Template Sequence		S	L	G	F	D	F	N	I	Y	R	T	N	D	E	G	K	A	K	A	G	D	I	S	N	T	T	.	.	.	.	.	W	S	L	A	A	A	Y	T	.	L	D	A	H	T	F	T	L	A	Y	Q	K	V	H	G	D	Q	P	F	D	Y	I	G	F	G	S	I	F	L	A	N	S	V	Q	Y	S	D	F	N	G
Template Known Secondary structure																T	T		S	S								.	.	.	.	.									.		T	T												S	S	S											S	S	T	T			S	S
Template Predicted Secondary structure																												.	.	.	.	.									.
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.						.	.	.	.	.	.	260	.		.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	V	G	T	W	I	A	G	V	G	Y	R	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	G	E	K	S	W	Q	A	R	Y	D	L	N	L
Template Known Secondary structure		T	T												T
Template Predicted Secondary structure
Template SS confidence
		311	.	.	.	.	.	.	.	.	320	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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