Job Description P39315 Confidence 99.72% Date Thu Jan 5 11:59:18 GMT 2012 Rank 84 Aligned Residues 184 % Identity 16% Template c3r6dA_ PDB info PDB header:lyase, isomerase Chain: A: PDB Molecule:nad-dependent epimerase/dehydratase; PDBTitle: crystal structure of nad-dependent epimerase/dehydratase from2 veillonella parvula dsm 2008 with cz-methylated lysine Resolution 1.25 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.			.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																												.	.
Query SS confidence																																												.	.
Query Sequence		I	A	I	T	G	A	T	G	Q	L	G	H	Y	V	I	E	S	L	M	K	T	V	P	A	S	Q	I	V	A	I	V	R	N	P	A	K	A	Q	A	L	A	A	.	.	Q	G	I	T	V	R	Q	A	D	Y	G	D	E	A	A	L	T	S	A	L	Q	G	V	E	K	L	L	L	I	S	S	S	E	V	G	Q
Query Conservation																																												.	.
Alig confidence																							.	.																				.	.																																		.	.	.
Template Conservation																							.	.																																																							.	.	.
Template Sequence		I	T	I	L	G	A	A	G	Q	I	A	Q	L	T	A	T	L	L	T	Y	T	.	.	D	X	H	I	T	L	Y	G	R	Q	L	K	T	R	I	P	P	E	I	I	D	H	E	R	V	T	V	I	E	G	S	F	Q	N	P	G	L	E	Q	A	V	T	N	A	E	V	V	F	V	G	A	X	E	S	.	.	.
Template Known Secondary structure						S	T	T	S	T	T	T											.	.									S	S					S						T	S	T	T								T	T									T	T		S					S					.	.	.
Template Predicted Secondary structure																							.	.																																																							.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.			.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.														.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	A	P	Q	H	R	N	V	I	N	A	A	K	A	A	G	V	K	F	I	A	Y	T	S	L	L	H	A	D	T	S	P	L	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	A	D	E	H	I	E	T	E	K	M	L	A	D	S	G	I	V	Y	T	L	L	R	N	G	W	Y	S	E	N	Y	L	A
Query Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.
Template Conservation		.	.																																																																												.	.	.
Template Sequence		.	.	G	S	D	X	A	S	I	V	K	A	L	S	R	N	I	R	R	V	I	G	V	S	X	A	G	L	S	G	E	F	P	V	A	L	E	K	W	T	F	D	N	L	P	I	S	Y	V	Q	G	E	R	Q	A	R	N	V	L	R	E	S	N	L	N	Y	T	I	L	R	L	T	W	L	Y	N	D	.	.	.
Template Known Secondary structure		.	.																								T	T	T	T	S		S											T	S																		S		S														.	.	.
Template Predicted Secondary structure		.	.																																																																												.	.	.
Template SS confidence
				82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.				.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.
Query SS confidence																																										.	.	.
Query Sequence		S	A	P	A	A	L	E	H	G	V	F	I	G	A	A	G	D	G	K	I	A	S	A	T	R	A	D	Y	A	A	A	A	A	R	V	I	S	E	A	G	.	.	.	H	E	G	K	V	Y	E	L	A	G	D	S	A
Query Conservation																																										.	.	.
Alig confidence		.	.	.	.																																					.	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	P	E	T	D	Y	E	L	I	P	E	G	A	Q	F	N	D	A	Q	V	S	R	E	A	V	V	K	A	I	F	D	I	L	H	A	A	D	E	T	P	F	H	R	T	S	I	G	V	G	E	P	G	T
Template Known Secondary structure		.	.	.	.										T	T	S																					T		S			G	G	G	T	T								T	T
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions