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Job DescriptionP39315
Confidence98.51%DateThu Jan 5 11:59:18 GMT 2012
Rank193Aligned Residues198
% Identity18%Templatec2wdzD_
PDB info PDB header:oxidoreductaseChain: D: PDB Molecule:short-chain dehydrogenase/reductase; PDBTitle: crystal structure of the short chain dehydrogenase2 galactitol-dehydrogenase (gatdh) of rhodobacter3 sphaeroides in complex with nad+ and 1,2-pentandiol
Resolution1.95 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40... ......50.........60.........70.......
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Query Sequence  IAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAA. . . . QGITVRQADYGDEAALTSALQGVEKLLLISSSEV
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Template Sequence  AAVTGAGSGIGLEICRAFAAS. . GARLILIDREAAALDRAAQELGAAVAARIVADVTDAEAMTAAAAEAEAVAPVSILVN
Template Known Secondary structure  TTTST..T
S
GGG

TT
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   14.....20.........30.... .....40.........50.........60.........70.........80.........90.
 
   78.80.........90.........100.........110.........120.........130.
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . GQRAPQHRNVINAAKAAGVKFIAYTSLLHADTSPLGLADEHIETEKMLADSGIV
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Template Sequence  SAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARGAGAIVNLGSMSGTIVNRPQFASSYMASKGAVHQLTR
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B
GGG

TTT


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B
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   92.......100.........110.........120.........130.........140.........150.........160.........170.
 
   132.......140.........150.........160..... ....170.........180.. .......190........
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Query Sequence  YTLLRNGWYSENYLASAPAALEHGVFIGAAGDGK. . . . . . . . . . . IASATRADYAAAAARVI. . SEAGHEGKVYELAGDS
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Template Sequence  ALAAEWAGRGVRVNALAPGYVATEMTLKMRERPELFETWLDMTPMGRCGEPSEIAAAALFLASPAASYVTGAILAVDGGY
Template Known Secondary structure  TTT

BSSGGGTST
TT
S
B
SGGGTT

S
STTG
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   172.......180.........190.........200.........210.........220.........230.........240.........250.
 
   199200.
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Query Sequence  AWT
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Template Sequence  TVW
Template Known Secondary structure  GG
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   252..
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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