Job Description P39315 Confidence 99.94% Date Thu Jan 5 11:59:18 GMT 2012 Rank 57 Aligned Residues 253 % Identity 16% Template c2q1wC_ PDB info PDB header:sugar binding protein Chain: C: PDB Molecule:putative nucleotide sugar epimerase/ dehydratase; PDBTitle: crystal structure of the bordetella bronchiseptica enzyme wbmh in2 complex with nad+ Resolution 2.19 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.			.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																																												.	.																																			.	.
Query SS confidence																																												.	.																																			.	.
Query Sequence		I	A	I	T	G	A	T	G	Q	L	G	H	Y	V	I	E	S	L	M	K	T	V	P	A	S	Q	I	V	A	I	V	R	N	P	A	K	A	Q	A	L	A	A	.	.	Q	G	I	T	V	R	Q	A	D	Y	G	D	E	A	A	L	T	S	A	L	Q	G	V	E	K	L	L	L	I	S	S	S	E	V	.	.
Query Conservation																																												.	.																																			.	.
Alig confidence																							.	.																				.	.																																			.	.
Template Conservation																							.	.
Template Sequence		V	F	I	T	G	I	C	G	Q	I	G	S	H	I	A	E	L	L	L	E	R	.	.	G	D	K	V	V	G	I	D	N	F	A	T	G	R	R	E	H	L	K	D	H	P	N	L	T	F	V	E	G	S	I	A	D	H	A	L	V	N	Q	L	I	G	D	L	Q	P	D	A	V	V	H	T	A	A	S	Y	K
Template Known Secondary structure						T	T	T	S													T	.	.	T										S	S			G	G	G	S				T	T								T	T															S										S
Template Predicted Secondary structure																							.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.			.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
											78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.																	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	G	Q	R	A	P	Q	H	R	N	V	I	N	A	A	K	A	A	G	V	K	F	I	A	Y	T	S	L	L	H	A	D	T	S	P	L	G	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	E	H	I	E	T	E	K	M	L	A	D	S	G	I	V	Y
Query Conservation		.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	P	D	D	W	Y	N	D	T	L	T	N	C	V	G	G	S	N	V	V	Q	A	A	K	K	N	N	V	G	R	F	V	Y	F	Q	T	A	L	C	Y	G	V	K	P	I	Q	Q	P	V	R	L	D	H	P	R	N	P	A	N	S	S	Y	A	I	S	K	S	A	N	E	D	Y	L	E	Y	S	G	L	D	F
Template Known Secondary structure			T	T										T													T	T		S								G	G	G	G		S	S		S	S	S	S	B		T	T						T	T
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		133	.	.	.	.	.	.	140	.	.	.	.	.	.				.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.
Query SS confidence																.	.	.
Query Sequence		T	L	L	R	N	G	W	Y	S	E	N	Y	L	A	.	.	.	S	A	P	A	A	L	E	H	G	V	F	I	G	A	A	G	D	G	K	I	A	S	A	T	R	A	D	Y	A	A	A	A	A	R	V	I	S	E	A	G	H	E	G	K	V	Y	E	L	A	G	D	S	A	W	T	L	T	Q	L	A	A	E	L
Query Conservation																.	.	.
Alig confidence																.	.	.																																							.	.
Template Conservation																																																									.	.
Template Sequence		V	T	F	R	L	A	N	V	V	G	P	R	N	S	G	P	L	P	I	F	F	Q	R	L	S	E	G	K	K	C	F	V	T	K	A	R	R	D	F	V	F	V	K	D	L	A	R	A	T	V	R	A	V	D	G	.	.	V	G	H	G	A	Y	H	F	S	S	G	T	D	V	A	I	K	E	L	Y	D	A	V
Template Known Secondary structure							S				S	T	T														T	T							S																				T	T	.	.									S		S
Template Predicted Secondary structure																																																									.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.			.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.		.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure																																																																	.
Query SS confidence																																																																	.
Query Sequence		T	K	Q	S	G	K	Q	V	T	Y	Q	N	L	S	E	A	D	F	A	A	A	L	K	S	V	G	L	P	D	G	L	A	D	M	L	A	D	S	D	V	G	A	S	K	G	G	L	F	D	D	S	K	T	L	S	K	L	I	G	H	P	T	T	.	T	L	A	E	S	V	S	H	L	F	N
Query Conservation																																																																	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	E	A	M	A	L	P	S	Y	P	E	P	E	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	E	L	G	A	P	S	I	L	L	D	P	S	R	T	I	Q	D	F	G	K	I	E	F	T	P	L	K	E	T	V	A	A	A	V	A
Template Known Secondary structure						T		S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							B			B											S
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.																										.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions